Crassostrea gigas (Pacific oyster): 105325707
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Entry
105325707 CDS
T03920
Name
(RefSeq) nuclear receptor ROR-beta isoform X3
KO
K08533
RAR-related orphan receptor beta
Organism
crg
Crassostrea gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
crg03000
]
105325707
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
crg03310
]
105325707
Transcription factors [BR:
crg03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
105325707
Nuclear receptors [BR:
crg03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
105325707
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
105325707
NCBI-ProteinID:
XP_011423680
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Position
LG8:33014875..33026004
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AA seq
544 aa
AA seq
DB search
MSKDPRPVVHKNQVKRKVSKRLGQKRDKYLPESLPLLLPPCKICGKKASGIHYGVNTCEA
CKGFFRRYLKRKEPYVCDKGWNCDLDIRSKGPHCSACRMKKCLTLGMSKEGVRQGRYTLT
ERTNRILEFKRLEKSRTNEWTCQDNPDESFQTDNRLCDNSELENSERNPDKSIKTEGRTG
YDPYESIHDSEHNLNDYSEVTCSSSRMDMLYSERLQNSLDHSCSGKQAMLLELSSLAAHS
GDYPTEYTSSSAEGSPQGKQTPRNTGTPMDFELPADVQEVVEALMKAYKHLQHITQSLSD
EEIRNRLDIGFARHQDKVNLFGNLDPIPTKEYNEIFEKTNLDVDSRTQNSSRRREEFGLA
MADYVAFSNEIPGFNELSVRDKATLVKVSRLDFFLSLEYRAKDPETEMMISYSGRAAHLS
DACAYLPQDMLRSWWKLTYDLRGLQMTTEEHATLLALCLMSTDRCKLESPESVQKIEATL
VKTMMSLLQRRYGERAGLQFSSYISLLTKLRGMSEEYHAVYRKICEDKVLIARAPELLSM
LFDE
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaggaccctcggcctgtggtccacaagaaccaggtcaaacgcaaggtcagcaag
aggctgggtcaaaagcgggacaagtacctgcccgagagtctccccctcctcctgcccccc
tgcaagatctgtgggaagaaggcctcagggatacattatggggtcaacacctgtgaggcc
tgcaagggcttcttcagaagatatctgaagaggaaggagccatatgtttgtgacaagggc
tggaactgtgaccttgacatcagatctaagggtccacactgctccgcatgtcgcatgaaa
aaatgcctcaccctggggatgtctaaagaaggagttcgacaaggccgctacacattgaca
gagagaacaaaccggatcttggaattcaaacggctcgagaaatccagaactaatgaatgg
acttgtcaggacaatccagatgaatcattccaaactgacaatagactttgtgataactct
gagctggaaaattcagaacgcaatccagataaatccattaaaactgagggaagaactgga
tatgatccatatgaatccatacatgatagtgaacacaatttgaatgactatagtgaagtt
acatgttcatctagcagaatggacatgctttatagcgagcgcctccaaaattccttggac
cacagttgttctggtaaacaggccatgctgcttgaactatccagtttagcagcccactcg
ggggactatccaaccgaatacacatccagcagtgccgagggttcaccccaggggaaacag
acacccagaaataccggcacccccatggactttgagttacctgcagatgttcaggaagtg
gttgaggcgttgatgaaggcttacaaacatcttcagcatattacacagagtctcagtgat
gaggagataaggaacagactagatatagggtttgcaagacatcaagacaaagtgaacctt
tttggaaatcttgacccgattcctaccaaagaatacaacgagatttttgagaagacaaac
ttggacgtggatagtcgaacccagaactcaagcagaagaagagaagagtttggattagcc
atggcagactatgttgctttcagtaacgagattccagggtttaacgagctttctgtcaga
gacaaggctacgttagtaaaagtatctcgactagactttttccttagccttgagtaccga
gctaaggatcctgagactgagatgatgatctcatactcaggtcgagctgcacatctctct
gacgcctgcgcatacctccctcaggatatgttgagatcttggtggaaactgacgtacgat
ctgagaggactacagatgacaacggaggagcacgccacactactggcgctttgtctgatg
tcaacagatcgttgtaaacttgagtccccagaatctgtacagaaaatagaggctacactt
gttaaaaccatgatgtccctactccagaggcggtacggggagagggcagggctacagttc
tcctcctacatcagcttactgaccaagctccggggaatgagtgaggagtaccatgctgtg
tatcgcaaaatctgtgaggacaaggtcctcattgcgagggcaccagaactactgtctatg
ctctttgatgagtga
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