Crassostrea gigas (Pacific oyster): 105336061
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Entry
105336061 CDS
T03920
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
crg
Crassostrea gigas (Pacific oyster)
Pathway
crg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
105336061
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
crg03400
]
105336061
Enzymes [BR:
crg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
105336061
DNA repair and recombination proteins [BR:
crg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
105336061
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
DNA_ligase_IV
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
105336061
NCBI-ProteinID:
XP_011438541
UniProt:
K1R0N9
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All DBs
Position
LG10:complement(14215824..14222773)
Genome browser
AA seq
915 aa
AA seq
DB search
MDEEDVDTKPELTVASQVSFAELCGLLEKISKTHGNEKKKAVLGTFVEKWREFHQELHKD
NPDTTDSFYAAMRLLVPQLEKQRAAYGIKEHMLAKLLIEVLCLGKDSADSNRLLNFKAPK
AAKGDAGDFAAVAYFVLKNRCPEKGTLTIQEVNNCLDGIATNNAAKKKDLVRKNILKLLT
NMSAIELKWLIRMIVKELKVGLSQTSVFSVYHPDAEEFYNVNNNLEKVCRMLRDKSVRVH
EIGIEIFSPFTPMLGERAAPDQVEKLMDGKPYIIETKFDGERILLHKQEGEYKYFSRSGN
EYTSTFGSNRYDGNMTPFIHECFQSSVKSCILDGEMIGYDAATKTFATKAMNTDIKHQRE
EGYQPCYYAFDLIMLNGRVLTNQPLKERLELLKTVFTEEEGRLFLSKHTEANTNQDCAEA
LNEAIDGREEGIMVKKPDSVYRPNTRKGGWFKIKPEYVGGLMDELDVLVVGGFFGVGHRS
GMMSHFLCALAVPEEDGSHPTVFHSFCKVGSGYSKKELAEFNKKLAEHWKVFNKKSPPSS
IILASGFKEKPDAYIEPKNSCIVQIKAAEVIDSERFKTGFTLRFPRVEKFRDDKAWYECM
TVPEVQEMKDRAGGKLAGGKVELREEEEPTKKKRKVVTHVIRPTLGAQFQAADLSDVTQT
SKIFEGKEFCVINGPSSLSKAAIEKKVAEYGGSVVQNPGSTTFCVLADKVVMRVTNLMKR
DLYDIVKVDWFKRCLDAQTFIPWAPADMIHTSAKTQMALKKDYDEFGDSYMQDTTPDQLK
YTFQHMDNSEISISTDEMAELEEKYFPDDSPYGLFRTCRFYLDNKLVIGDPSTQIKDSSL
EFLALELRFFGGTVSDSLDKKVSHVMVDKRDLSRVQELKQERRKRSRKFHIVNEDWLRQC
LEEGSLCSERQFEPS
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagaagatgtggacaccaaaccagaactgacggttgcgtctcaggtgtctttt
gccgaactgtgtggattgttggaaaagatctctaaaacccatggcaatgagaaaaagaag
gctgtgctggggacatttgtggagaaatggcgtgaatttcatcaggagttgcataaagat
aatccagataccacggactcattttatgcagctatgcgactcttggtgccacaacttgaa
aagcaaagagcagcttatggaataaaagagcatatgttggctaaactcttgattgaagtc
ctgtgtctgggaaaggacagtgcagattctaacagactactgaacttcaaagcacccaaa
gctgccaaaggggatgctggagactttgcagctgtggcttactttgtgctaaaaaatcgc
tgccctgaaaaagggacactgacgatacaggaagtcaacaactgcttagatggcattgcc
acaaataatgcagcgaagaaaaaagaccttgtccgtaagaacatcctaaagcttctgacc
aatatgtctgctattgaactgaagtggctgatccggatgatagtgaaggaactaaaagtt
ggactgagtcagacgtctgtgttcagtgtgtatcaccctgatgctgaggaattctacaat
gtcaacaacaatctggaaaaggtttgtcgaatgttgagggacaaaagtgtaagagtgcat
gagattggaatagagatattttctcctttcactccaatgcttggggagagagcagcacca
gatcaggttgaaaaactaatggatggcaagccatacatcatagaaaccaaatttgatgga
gagagaattcttctacacaaacaggagggagaatacaaatatttctccaggagtggtaat
gaatacacaagcacctttgggtccaatcgatacgacggaaacatgacaccattcatccat
gaatgctttcaatcatctgtgaaatcctgcatattggatggagaaatgataggatatgat
gcagcaacaaaaacatttgccactaaggccatgaacacagatataaagcaccagagagag
gagggatatcagccatgttattatgcttttgacctgataatgctcaatgggcgtgtcctt
acgaaccaaccactgaaggaacgcctggagttactgaagactgtgttcacagaggaagag
gggaggctctttctgagtaaacacacagaagccaacacaaatcaagactgtgcagaggct
ctgaacgaggcgattgatggcagggaggagggaatcatggtcaaaaaaccagactctgtg
tatcgacccaacaccaggaaggggggctggttcaaaatcaaaccggagtatgtgggagga
ctgatggatgaactggacgtcctggtcgtggggggtttctttggggtggggcaccgaagt
gggatgatgtcccactttctttgtgcattggcagttccggaggaagatgggagccatcca
actgtcttccattctttctgcaaggttggatcagggtattctaaaaaagaacttgcagag
ttcaacaagaaacttgctgagcactggaaggtctttaacaagaaaagtccaccctcttct
attatactggcttccggatttaaagagaaaccagacgcatacattgaaccaaaaaactca
tgtatagttcagatcaaggcagcagaagtcatagacagtgagagatttaaaacaggcttc
actctgagatttccccgtgtggagaaattccgtgatgacaaggcgtggtacgagtgtatg
acagtacccgaggtccaagaaatgaaggatagagctgggggtaaacttgctggaggcaaa
gtggagctgagggaggaagaggaaccaaccaagaaaaaacggaaagttgtgacccatgtc
atccgacccactctgggtgctcagttccaggcagcagatctgtctgacgttactcagaca
tccaagatctttgaaggaaaagagttctgtgtgatcaatggtccctcttctttaagtaaa
gcagcaattgagaaaaaagtggcagagtatggaggttctgttgttcaaaacccaggatct
accacattttgtgtgctggctgacaaagttgtcatgagggttacaaacctgatgaagcgt
gacctgtatgatattgtaaaggttgactggttcaagagatgcttggatgcacagacattc
attccatgggcacctgctgatatgatccacacctcagcaaagacacagatggctctgaag
aaggattatgacgagtttggagatagttatatgcaggatactactccagatcaactcaag
tacacctttcaacacatggataatagtgaaatatccatttcaacagatgaaatggctgaa
ttggaagagaaatatttccctgatgattctccatatggattgttcagaacatgcagattt
tacttggacaacaagcttgtaataggtgatccctcaacacaaatcaaagactcgtctttg
gaattcctggccttggagctgaggttttttggcggaacagtctccgactctctggacaaa
aaagtctcccatgttatggttgacaaaagagatttgagcagagtacaagagttaaaacaa
gagagaagaaaaagaagtaggaagttccacattgtgaatgaggattggctgcgacagtgt
ttagaggagggcagtctgtgctcagagagacagtttgaaccgtcctga
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