Magallana gigas (Pacific oyster): 105345709
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Entry
105345709 CDS
T03920
Name
(RefSeq) THO complex subunit 3 isoform X1
KO
K12880
THO complex subunit 3
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03013
Nucleocytoplasmic transport
crg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105345709
09122 Translation
03013 Nucleocytoplasmic transport
105345709
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crg03019
]
105345709
03041 Spliceosome [BR:
crg03041
]
105345709
Messenger RNA biogenesis [BR:
crg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
105345709
Spliceosome [BR:
crg03041
]
Complex C
Other components
EJC/TREX
105345709
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
105345709
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
eIF2A
RMC1_N
NBCH_WD40
PD40
IKI3
Peptidase_S9_N
Coatomer_WDAD
PROPPIN
WD40_like
Cytochrom_D1
DPPIV_N
Nup160
Motif
Other DBs
NCBI-GeneID:
105345709
NCBI-ProteinID:
XP_034329498
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All DBs
Position
LG4:13392882..13397173
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AA seq
323 aa
AA seq
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MATYIENMRKHFQQNKRIREHTAHDSKVHSVAWSCDGRRLASGSFDKTVSVFQLDNDRDR
MVKDCTFRGHSDSVDQLCWHPKNPDQLVTASGDKTIRIWDARTNRSVATVNTKGENINIC
WSPDGSTIAVGNKDDLITFIDVRSHRSKAEEQFKFEVNEISWNNDGDLFFLTSGQGSINI
LSYPDLKLQHTLNAHPANCICIEFDPKGKYFATGSADALVSIWDVAELACIRTLSRLEWP
VRTLSFSHDGKMLASASEDLIIDIAEVDSGEKVAEITCEAPTFTVAWHPRRPLLAYACDD
RDTYDRNRDAGTVKVFGFPSDNS
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atggcaacttacattgaaaacatgcgaaaacattttcagcaaaacaagagaatacgagag
cacacggcgcacgactccaaagttcactccgtggcgtggagctgtgacggacggcgcttg
gcctcggggtcctttgacaaaactgttagcgttttccagctagacaatgacagagaccga
atggtcaaagattgcacatttcgtggacatagcgacagtgttgaccagctgtgttggcat
ccaaagaatccggatcagttggtgacagctagtggagacaagacaatacgaatctgggac
gcccggaccaatcgttctgtggccactgtcaatactaaaggtgaaaacataaacatctgc
tggtcaccagatggcagcactatagctgtgggcaacaaggacgatctaattacatttatt
gatgtcagaagtcacaggtcaaaggccgaggaacagtttaagtttgaggtcaatgagatc
tcgtggaacaatgacggggacctgttcttcttgacgagtgggcaaggcagcataaacata
ctgagctacccagatttaaaactccagcacaccctgaatgctcaccctgctaactgtatc
tgtatcgagtttgaccccaagggaaagtactttgccaccggtagtgcggacgccttggtc
agtatttgggatgtagcagagctagcctgtattagaaccctctccaggttagagtggcca
gtcagaactctaagcttcagccatgacggcaaaatgttggcctcagcgtcagaagatctg
attatagacatagcagaggtcgactcaggggagaaagtcgcagaaataacgtgcgaggcc
ccgacttttacagtcgcctggcatccacgtcgcccccttctggcttacgcctgcgacgat
cgtgacacttacgacagaaatcgggatgcagggaccgtgaaagtgtttggattccccagc
gataactcatga
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