Corynebacterium riegelii: AK829_05615
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Entry
AK829_05615 CDS
T09801
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
crie
Corynebacterium riegelii
Pathway
crie03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
crie00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AK829_05615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
crie03400
]
AK829_05615
Enzymes [BR:
crie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AK829_05615
DNA repair and recombination proteins [BR:
crie03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AK829_05615
BRITE hierarchy
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
CbiX
MFD_D3
AAA_16
RecG_dom3_C
IstB_IS21
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AKV58733
UniProt:
A0A0K1RBG8
LinkDB
All DBs
Position
complement(1156189..1159758)
Genome browser
AA seq
1189 aa
AA seq
DB search
MTSSTPAALGGLLTAALTDPKLKGVAARVGDESLHITAIDQARAWVAGALARQVPVLVVT
ATGHEAEDLAAELKALVGEQKVAHYPALETLPHERLSPAADVVGRRAKVLWEKPRVVVAA
ARAVCQPVLPAVAPIEVAVDAECEFDDLVRRVEYFGYSHVDMVATRGEFAVRGGILDVFP
TTALNPVRIEFWGDEVTDIRSFAVADQRTIEELPQVSLFPARQLLIDADVKAAADTLARR
FPSNPTLSSLLSRVAEGVHAAGEEALMPALTSQPWQVLPELFEGGIVLVTSPEKVRTRIA
DLEATDREFLEAGWEAAAMGAEGPVAVEGVDLEASSYRSFESLEISARKAGNAWWTFAPP
GMFNADDRATLPLEFDAAPAPKGDPKAIEQLYATLKLHVVENHGKVAFVAPAKGTVERMA
ERLREHGISARIATPGLEPVEGAATLYQALSHGGLVFGGPNLVVVTETDVTGNRVGDIAG
AKRRAPKRRNRVDPLALKPGDYVVHETHGIGRFLKMAERTVADSRREYIVLEYQAAKRGQ
PADQLWVPMESLDLLSKYTGGEKPSLSKMGGSDWKSTKRKARAAVREIAGELIELYAKRQ
AAPGHAFAPDTPWQNEMEDAFPFVETEDQLAAIEAVKHDMEQPVPMDRVIVGDVGFGKTE
VAVRAAFKAVQDGKQVAVLVPTTLLAQQHYSTFSQRMDGFGVTVRELSRFTSAGDAKKIL
AGLADGSVDVVIGTHRLLSTGMQWKNLGLIVVDEEQRFGVEHKEHIKALKSHVDVLTMTA
TPIPRTLEMSLTGIREMTSITTPPEDRHPVLTYVGPQEDKQVAAAIRRELLRDGQVFFIH
NKVADIEKAARRIRDLVPEARVVVAHGQMSEQLLEQTVQGFWNREYDVLVCTTIVETGLD
IANANTLIVENAQNMGLSQLHQLRGRVGRSRERAYAYFLYPKDITLTETSYDRLATIAQN
NDLGAGIAVAQKDLEMRGAGNVLGSEQSGHIAGVGFDMYVRLVGEAVETFKALMKGEVVD
ATDQAPKEIRVDLPVDAHIPGTYINSERLRLEAYRKLAEARGEEALRQVADEMVDRFGPL
PTEVEFLMEVARLRDQARSVGVSDILSQGNRLKFHPVELPDSKQVRLKRLYPGATYRAAA
KTVQVPMPRESKAINSPSLRDTELLQWVSHFLSDMFDAPDASGVFSFKG
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgacatcgagcacacccgccgcacttggtgggcttctcacggcagcgttgactgacccg
aaacttaaaggggttgccgcgcgcgtgggggatgaatccttgcacatcactgcgattgat
caggcacgtgcgtgggttgctggcgcgttggctaggcaggtgccggtgctggtagttacc
gccacgggtcacgaggccgaggaccttgccgcggagctgaaggccctggttggtgagcag
aaggtcgcccactacccggcgctggagaccctgccgcatgagcgcctttcgcctgctgct
gatgttgtgggcaggcgtgccaaggtgttgtgggagaaaccgcgggtggtggttgctgcc
gcacgtgcggtgtgccagccggtgctgcctgccgttgcgccgattgaggtcgcggtggat
gcggagtgcgagttcgatgacctggtgcgtcgcgttgagtacttcggctactcgcacgtg
gacatggttgccacccgcggcgagttcgcggtgcgcggcggcatcctggatgtgtttccc
accacggcgttaaacccagtgcgtattgagttctggggcgacgaggttactgacatccgc
agcttcgcggttgcggaccagcgcaccattgaagaactaccgcaagtcagtttgttcccc
gcgcgccagttgcttatcgacgctgacgtgaaagcagcagccgacaccctcgcccgccgc
ttcccgtcgaatccgaccttgtcgtccctgcttagccgcgtggctgagggcgtgcacgct
gcgggtgaggaggcactgatgcctgcgctgacttcgcagccgtggcaggtgctgccggag
ctgtttgagggcggcatcgtgttggtgaccagcccggagaaggtccgcacccgcatcgcg
gacctggaggcaacggaccgcgagttcctggaggcagggtgggaggccgccgccatgggt
gcggaaggcccggttgctgtagaaggcgttgacttagaggcatcgtcgtaccgctccttc
gagtcgctggagatctccgcgcgcaaggctggcaacgcctggtggacgttcgccccgcca
ggcatgttcaatgcggacgatagggccacgctgccgctggagttcgacgccgcacccgca
ccgaagggagacccgaaggcaatcgagcagctgtacgcaacgttgaagctgcacgtggtg
gaaaaccacggcaaggtggcgttcgtggcgcctgcgaagggcaccgtggagcgcatggcg
gagcgcctgcgtgagcacggcatctccgcgcgcattgcaacacctggcctggagccggtc
gaaggtgctgccacgctgtaccaggcgctttcccacggcggcctcgtctttggcgggccg
aacctggttgtggtgacggaaaccgatgtcaccggcaaccgcgtgggtgatattgcgggg
gcgaagcgtcgtgcgccgaagcgccgtaaccgtgtggacccgctggcactcaaacccggc
gactacgtggtgcacgaaactcacggcattggccgattcctcaagatggcggagcgcacc
gtggcagattcgcgccgcgagtacatcgtgctggagtaccaggccgccaagcgtggccag
cccgcggaccagctctgggtgcccatggaatcgctggacctgctgagtaagtacacgggt
ggggagaagccgagcttgagcaaaatgggtggctccgactggaagtccaccaaacgcaag
gcgcgcgccgcggtgcgcgagatcgccggggagcttattgagctctacgccaagcgccaa
gccgcgccgggccacgcgtttgcgccggatacgccgtggcaaaacgagatggaagacgcc
ttcccgtttgtggagacggaagaccagctcgctgcgattgaggccgtgaagcacgacatg
gagcagccggtgccgatggaccgtgtcattgtgggtgacgtgggctttggcaagaccgag
gttgccgtgcgcgccgcgttcaaagcggtccaggacggcaaacaggtagcggtgctcgtg
cctacaaccctgcttgcccagcagcattactctacgttcagccagcgtatggacggtttc
ggcgtgaccgtgcgcgaattgtcccgtttcacctccgcgggcgatgcgaagaagatcctc
gccggtcttgcagacggctcggtggacgtagtcattggcacccaccgcctgttgtccact
ggtatgcagtggaaaaacctaggcctgatcgtggtggatgaggagcagcgtttcggcgtg
gagcacaaggagcacatcaaggcgctgaaatcccacgtggatgtgctgaccatgaccgca
accccgattccgcgcacccttgagatgtcgctgaccggcatccgcgagatgacgtctatc
accaccccaccggaggaccgccacccggtgctgacttacgttggcccgcaggaggacaag
caggttgcggcggcgatccggcgcgagttgctgcgggacggccaggtgttcttcatccac
aacaaggtcgccgacattgaaaaagctgcccgacgtatccgcgacctggttccggaggcg
cgagtggtagtcgcccacgggcagatgtctgagcagctgctggaacaaaccgtgcagggt
ttttggaaccgcgagtacgacgtgttggtatgtaccaccatcgtggaaaccggcctggac
attgcgaacgcgaacacgctgattgtggaaaacgcgcagaacatgggcctgtcccagctg
caccagctgcgtggccgcgttggccgttcgcgtgagcgggcgtacgcctatttcctgtac
ccgaaggacatcacgctgacggaaacctcctatgaccgcctggccacgatcgcgcagaat
aacgaccttggcgcaggcattgccgttgcgcagaaggacttggagatgcgcggcgccgga
aacgtgttgggctctgagcagtccggccacatcgcgggcgttggctttgacatgtacgtc
cgcctggtgggtgaggctgtggagacgttcaaggccctgatgaagggcgaggttgtggat
gccaccgaccaggcgccgaaggagatccgggtggacctgccagtggacgcccacattccg
ggaacctacatcaactccgaacgcctgcgcctggaggcctatcgcaaacttgcggaagct
cgcggtgaagaagcgctgcgccaggttgccgacgaaatggtggaccgcttcgggcccctg
cctacggaggtggagttcctcatggaggtcgcgcgcctgcgtgaccaggcccgcagcgtt
ggggtctcggacatcttgagccagggcaaccgcttgaagttccacccggttgagctgccg
gactccaagcaggtgcgcctgaagcgcctgtacccgggtgcgacgtaccgtgctgcggcg
aaaacggtccaggtgccgatgccgcgcgagtcgaaggccattaacagcccctcgcttcgc
gataccgagctgctgcagtgggtctcacactttcttagcgacatgtttgacgctcccgat
gcctccggcgtgttctcctttaaaggataa
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