Citrobacter rodentium: ROD_15871
Help
Entry
ROD_15871 CDS
T01145
Name
(GenBank) putative virulence effector protein
Organism
cro
Citrobacter rodentium
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SrfB
Motif
Other DBs
NCBI-ProteinID:
CBG88350
UniProt:
D2TJD5
LinkDB
All DBs
Position
1688781..1691762
Genome browser
AA seq
993 aa
AA seq
DB search
MLVNLCDYKQSVTLIANSGVQFLDFGVTPQESAHHGRFVRKTANGPLLRLEYDLANERYT
LPARPGQQPEVVKPESTQTLRYSLDVLNGVWLPLPFLRFNPPRTFVAGPDNWARVQVRKL
AAPDGAGHTHRITIALDSQLSERAPAALAPCENDLRNGTRFALAWRDDEVADFLDQTWID
GWLREVFLSYAGQVESRSEQELNQALRNFEYQAHWLNLLALLGEQLAVPEVKLVTATLST
PAIPVDLILDVGNTHTCGVLIEDHGDANDGLRQTAELQVRSLSEPQYLNDPLFTSRLEFS
EARFGKQHFSVESGRDDAFVWPSIVRVGDEARKLAMQRSGTDGNSGISSPRRYLWDETPA
LHDWRFSQINSKTQREPLATAFPLMNLMNDDGQPLYALPQDERLPVFSPQYSRSTLMTHM
LCEILAQALGQINSVATRLRLGFPASPRQLRSLILTLPSAMPKQEREIFRLRMFEAIALV
WKAMGWHPQDEDFSTRKQREKSVVPVPEIQMEWDEASCGQLVWLYNEAISHYAGRSEAFF
NALARPDRLPEAGENKGRALRVASIDIGGGTTDMAVVHYQLDDGVGANVKITPHLLFREG
FKVAGDDMLLDVIQKCILPALQTRLQQAGVTDAAALLATLFGDSGRIDTQAVLRQQTALQ
LFMPLGHAVLSAWEKSDVNDPLAGLHATFGDLLPHRPTRNVLNYVQQAIDHALPSGSPAF
DLFSVPLQVQFSQLQEAMLAGQFTLTSPLHAVCEAISHYCCDVLLVTGRPACIPAVQALI
RHLQPVPVNRMVWMDNYRVHEWYPFSQQGRIGNPKSTAAVGAMLCSLALDLRLPRFNFKA
ADIGAYSTVRYLGVLDNTVNTLREENVWYQDIDLDKPAEKLDVRAHFPLRGNVTLGFRQL
ANSRWPATPLYTLSINSADLAKTIAGDGVLNVRLQLRGGSKESGPEAFVLSDAWLQDGTP
VAPDALTLKLNTLADRRHSGSHYWIDSGSVYLK
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgctggtgaatctgtgtgattacaaacagagcgtcacgctcatcgcaaacagcggcgtc
cagtttctcgacttcggcgtaacgccgcaggagtcagcgcatcacgggcgttttgtgcgt
aaaaccgcgaacggaccgctgctgcgcctggagtacgatctggcgaacgagcgctacacc
ctgcccgcccgtcccggccagcagccggaggtggtaaagcccgagagcacgcagacgctg
cgctattcgctggatgtgcttaacggcgtctggctgccgctgccgtttctgcgctttaac
ccgccgcgaaccttcgtcgccggaccggataactgggcgcgggtacaagtacgtaaactg
gccgcgccggacggcgccggtcatacccatcgcatcaccatcgcgcttgacagtcagctc
agcgaacgcgcgccggccgcgctggcgccctgcgaaaacgatctgcgcaacggcacgcgc
tttgcgctggcctggcgcgacgacgaagtggccgattttcttgaccagacgtggattgac
ggctggctgcgcgaagtgtttctcagctatgcgggccaggtggaaagccgctcagagcag
gaactgaaccaggcgctgcgcaattttgaataccaggcgcactggctgaatctgctggcg
ctgctcggcgagcagcttgccgtgccggaagtcaaactggtgaccgccactctcagcacg
ccggccattccggtcgacctgatccttgacgtcggcaatacccatacctgcggcgtgctg
atcgaagatcatggcgacgccaacgatggcctgcgccagacggcggaattacaggtgcgt
tcgctcagcgaaccgcagtatctgaacgacccgctgttcaccagccgccttgagttttca
gaagcccgcttcggcaaacagcacttctccgtcgaaagcggacgcgacgatgcgtttgtc
tggccgtcgattgtgcgggtcggcgatgaggcgcgtaagctggcgatgcagcgcagcgga
accgacggcaatagcggcatctccagtccgcgccgctatctgtgggatgagacgccagcg
ctgcacgactggcgtttcagccagatcaacagtaaaacccagcgcgaaccgcttgccacc
gcctttccgctgatgaacctgatgaatgacgatggacagccgctgtacgcgctgccgcag
gatgagcgtctgccggtgttttcaccgcagtacagccgcagcaccctgatgacccacatg
ctctgcgagatactggctcaggcgctggggcagattaacagcgtggcgacccgtttacgg
cttggcttcccggcgtcgccgcgacagttacgttcgctgatcctcacgcttccctcggcg
atgccgaaacaggagcgggaaatcttccgcctgcggatgtttgaagccatcgcgctggtc
tggaaagcgatgggctggcacccgcaggatgaggatttcagcacccgcaaacagcgggaa
aaaagcgtggtcccggtgccggaaattcagatggagtgggacgaagccagctgtggacag
ctggtatggctgtataacgaagcgatctcccattatgccggacgcagcgaggcgtttttt
aatgcgctggcgcgtccggatcgcctgccggaagcgggtgaaaacaaaggtcgcgcgctg
cgcgtggcctcgattgacatcggcggcggcaccaccgacatggccgtggttcactatcaa
ctggacgacggcgtcggcgctaatgtcaaaattaccccgcatctactgttccgcgaaggg
tttaaagtcgcgggcgatgacatgctgctggatgtgatccagaaatgtattctgcctgcc
ctgcaaacccgcctgcagcaggccggggtgacggacgccgccgccctgctcgccacgctg
ttcggcgactccgggcgaatcgatacccaggcggtattacgccagcaaacggcgttacag
ctctttatgccgctcggtcatgcggtactgtcggcgtgggaaaagagcgacgttaacgat
ccgctggcaggactgcacgccacctttggcgatctgctgccccatcgcccgacgcgcaac
gtactgaattacgtccagcaggcgatcgatcacgccctgccgtcaggctcgcccgcgttc
gatctgtttagcgtcccgctgcaggtccagttcagccagctgcaggaggcgatgctggcc
gggcagtttaccctgacctccccgctgcatgcggtgtgcgaggccatttcacactactgc
tgcgacgtgctgctggtcaccggcagaccggcctgtattccggcggtgcaggcgctgatc
cgccatctgcagccggtgccggttaaccggatggtgtggatggacaattaccgcgtgcat
gagtggtatccgttcagccagcagggacggattggcaatccgaaatccaccgccgcggtg
ggcgcgatgctgtgcagcctggcgctggatcttcgcctgccgcgctttaacttcaaagcg
gccgatattggcgcctactccaccgttcgctatctcggcgtactcgacaacacggttaac
accctgcgggaagaaaacgtctggtaccaggatatcgatctggacaagcctgccgagaag
ctcgacgtccgggcgcactttccgctgcgcggcaatgtcactctcggtttccgccagctg
gcgaacagccgctggcccgccacgccgctgtatacgctgagtattaattccgccgacctg
gccaaaaccatcgctggcgacggcgtactgaacgtacgactgcaactgcgcggcggcagt
aaagagagcggaccggaagcgtttgtactgagcgacgcctggctacaggatggcaccccc
gtcgcgccggatgccctgaccctgaaattaaatacgctggctgaccgccgacacagcggc
agtcattactggatagacagcgggagcgtgtacctgaaatga
DBGET
integrated database retrieval system
