Crossiella sp. CA-258035: N8J89_22795
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Entry
N8J89_22795 CDS
T09057
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cros
Crossiella sp. CA-258035
Pathway
cros03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cros00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
N8J89_22795 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cros03400
]
N8J89_22795 (ligD)
Enzymes [BR:
cros01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
N8J89_22795 (ligD)
DNA repair and recombination proteins [BR:
cros03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
N8J89_22795 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
WHT15962
LinkDB
All DBs
Position
4976975..4977895
Genome browser
AA seq
306 aa
AA seq
DB search
MDADTVTVAVEDRRVRLTNLDKVLYPRARTTKSEVIDYYARIAPVMLPHLRHRPATLRRF
PDGVTGESFYEKNTSRHAPDWVATAEIPTPGSSRGRDSAHFLLVNDLATLMWAANLAALE
LHVPQWTVGPRGGIREPDRLVFDLDPGAPADLVLCCRVAEHLRTVLAEDGLTAYPKVSGG
KGLQLYVPVRVSTPERTSAYAKAIAERLARQLPNLVVSRMTKTERTGKVLIDWSQNNPAK
TTVAPYSLRAQPTPTVAAPITWAEVENCTKPAQLRFSPAEAIDRVEDDGDLWAALLDPGR
AQHLPR
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
gtggacgccgacaccgtcacggtcgcggtcgaagaccgccgggtacgcctgaccaacctg
gacaaggtgctctacccgcgggcccgcaccaccaagtccgaggtcatcgactactacgcc
cgcatcgccccggtcatgctcccgcacctgcgccaccgcccggccaccctgcgccgcttc
cccgacggcgtcaccggcgagagcttctacgagaagaacacctcccggcacgcccccgac
tgggtcgccaccgccgagatccccacccccggcagcagtcgcggccgcgacagcgcccac
ttcctgctcgtcaacgacctggccacgctgatgtgggcggccaacctcgccgccctggaa
ctccacgttccacagtggacggtcggaccccgcggcggcatcagggaacccgaccgcctg
gtcttcgacctcgaccccggcgcacccgccgacctggtcctgtgctgccgcgtcgccgaa
cacctgcgcaccgtgctcgccgaggacggcctcaccgcctaccccaaggtcagcggcggc
aaaggcctccagctctacgtcccggtccgggtcagcacccccgaacgcaccagcgcctac
gccaaggccatcgccgaacgcctggccaggcaactgcccaacctggtcgtctcccgcatg
accaaaaccgaacgcaccggcaaggtcctcatcgactggagccagaacaaccccgccaag
accaccgtggccccctactccctgcgcgcccagcccacccccaccgtcgccgcccccatc
acctgggccgaggtggagaactgcaccaaacccgcccagctccgcttcagcccggccgag
gccatcgaccgcgtcgaggacgacggcgacctgtgggccgccctgctcgaccccggccgg
gcccagcacctgccccgctaa
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