Crassaminicella thermophila: FQB35_11935
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Entry
FQB35_11935 CDS
T06186
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
crs
Crassaminicella thermophila
Pathway
crs03030
DNA replication
crs03410
Base excision repair
crs03420
Nucleotide excision repair
crs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
crs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FQB35_11935 (ligA)
03410 Base excision repair
FQB35_11935 (ligA)
03420 Nucleotide excision repair
FQB35_11935 (ligA)
03430 Mismatch repair
FQB35_11935 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
crs03032
]
FQB35_11935 (ligA)
03400 DNA repair and recombination proteins [BR:
crs03400
]
FQB35_11935 (ligA)
Enzymes [BR:
crs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FQB35_11935 (ligA)
DNA replication proteins [BR:
crs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FQB35_11935 (ligA)
DNA repair and recombination proteins [BR:
crs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FQB35_11935 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FQB35_11935 (ligA)
MMR (mismatch excision repair)
DNA ligase
FQB35_11935 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FQB35_11935 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
HHH_3
RNA_ligase
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
QEK13666
UniProt:
A0A5C0SIY3
LinkDB
All DBs
Position
complement(2358839..2360818)
Genome browser
AA seq
659 aa
AA seq
DB search
MARKKIDQLIDIINEHNYKYYVLDNPEITDYEYDMLMNELISLEKQFPELIRQDSPTQRV
GGEPLEAFVQVQHSVPMLSLDNSYNKEDLLDFHNRIRKVIDGKIEYIVEPKIDGLSVSLK
YEKGIFVQGATRGDGFVGEDITSNLRTIKTIPLKLKEEIDIEVRGEVYISREKFAELNQK
QAEKGETIFANPRNAAAGSLRQLDPKIAAKRNLDIFIFNIQTIKNMHISKHTEGFEYLKS
LGFKTSMYEVCHSIEEVIDQCEKWAEKRSNIPFEIDGLVIKINDLEQREALGTRSKSPRW
AIAYKFPAEQKKTIVKDITIQVGRTGALTPTAELEPVRVAGSVISRATLHNEDYIKEKDI
RIGDRVIIQKAGDVIPEVVRVVFDDRTGQEKEFKMPKVCPACGEEVIRLEGEAVTRCINT
ACPAQLRRGFIHFVSRDAMNIDGLGESIVNLLLDNNLVKDFADLYSIKKEDLVPLERMGE
KSAQNLINAIEKSKNNDLDRVIFGLGIKLVGVRAAKLLADAFGDMDKLMKATYEEIVAIP
EIGDKMAKSIEAFFKEDRNLKTIEKLRAAGVNMKALKTSEEEVEKKFEGLIFVLTGTLQK
YKRNDAKAIIEKLGGRVSGSVSKKTSYVLAGAEAGSKLEKANQLGIRVISEEEFEQMIK
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atggcacgtaaaaaaatagatcaattgattgatattatcaatgagcataattataagtat
tatgtattagataatccagaaattacagactatgaatatgacatgctgatgaatgaatta
atatcattagagaagcaatttccagagcttattcgtcaggattcaccaacgcaaagggta
gggggagagcctctagaagcttttgttcaagtgcagcatagtgtgccaatgcttagttta
gacaattcttataacaaagaggatttgttagattttcataatagaatccgaaaagttatt
gatggtaagatagagtatatagttgaacctaaaattgatggattgtctgtatctttaaag
tacgaaaaaggaatatttgttcaaggggctactcgtggagatggatttgttggagaagat
attacatctaatctacgaacaataaagaccattccacttaagttaaaggaagaaatagat
attgaagtaagaggggaggtttatatttcccgggaaaaatttgcagaattaaatcaaaaa
caagctgaaaaaggagaaactatttttgcaaatcctagaaatgcggcagctggttcttta
agacagcttgatcctaaaatagctgctaagagaaatttagatatatttattttcaatata
caaacaattaaaaatatgcatattagcaagcatacagaaggatttgaatatcttaaaagc
ttagggtttaaaacttctatgtacgaagtttgccatagcatagaagaagtaatagatcaa
tgtgaaaaatgggcagaaaaaagaagcaatataccttttgagattgatggacttgttatt
aagataaatgatttagaacaaagagaggctcttggtacaagatctaagagtccacgatgg
gctattgcttataaatttcctgctgaacaaaaaaagacaattgtaaaagatattactatt
caagttggaagaacaggagcattaacaccaacggcagaacttgaacctgtcagggtagca
ggatctgttattagccgtgctacattgcataatgaggattacattaaagaaaaagatatt
cgtattggggatagagtaataattcaaaaggcaggagatgttataccagaagttgttcgt
gttgtttttgatgatagaacaggtcaagagaaagaatttaaaatgccaaaagtttgtcca
gcttgtggtgaagaggttataagattagaaggtgaagctgttacaagatgtataaatact
gcttgtcctgctcaattaaggagaggttttatacattttgtatcaagagatgctatgaat
attgatgggcttggggagtcaattgtaaatttattgttagacaataatttggttaaagat
tttgcagatttatattctattaaaaaagaagatttagttcctttggaaagaatgggagaa
aaatctgctcaaaatttgataaatgctattgaaaaatctaaaaataatgatttggatcgt
gtaattttcggtttaggaataaaactagtaggtgttagagcagctaaacttttagcagat
gcttttggagatatggataaattgatgaaagcaacctatgaagaaattgtagccattcct
gagataggagacaaaatggcaaaaagcatagaagcttttttcaaagaagataggaacctt
aaaactattgaaaaattaagagctgctggtgtaaatatgaaagctttaaaaacttcagag
gaggaagtagaaaagaaatttgaaggattaatatttgtattgacaggaacacttcaaaaa
tataagcggaatgatgcaaaggcaattatagaaaaattaggtggaagggtttcagggagt
gtaagtaaaaagacaagttatgtactagcgggagctgaagcaggttcaaaattggaaaaa
gcaaatcaattagggattcgtgtaattagcgaagaagaatttgaacaaatgattaaataa
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