Camelina sativa (false flax): 104780927
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Entry
104780927 CDS
T05044
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1A isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat04120
Ubiquitin mediated proteolysis
csat04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
104780927
04120 Ubiquitin mediated proteolysis
104780927
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
csat04121
]
104780927
Enzymes [BR:
csat01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104780927
Ubiquitin system [BR:
csat04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104780927
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_5
zf-RING_11
zf-RING_16
phiKZ_IP
PAP1
zf-RING-like
Motif
Other DBs
NCBI-GeneID:
104780927
NCBI-ProteinID:
XP_010503775
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All DBs
Position
1:7069136..7072109
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AA seq
505 aa
AA seq
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MIRLRTYAGLSFIATLAVIYHAFSSRGQFYPATVYLSTSKISLVLLLNMCLVLMLSLWHL
VKFVFLGSLREAEVERLNEQAWRELMEILFAITIFRQDFSSGFLPLVVTLLLIKALHWLA
QKRVEFIETTPSVSKLSHVRIVSFMGFLLLVDSLFMYSSVRHLIQTRQASVSLFFSFEYM
ILATTTVAIFVKYVFYVTDMIMDGQWEKKPVYTFYLELIRDLLHLSMYICFFFVIFMNYG
VPLHLLRELYETFRNFQIRVSDYLRYRKITSNMNDRFPDATPEELVASDATCIICREEMT
NAKKLICGHLFHVHCLRSWLERQQTCPTCRALVVPPENATSAAAGQRGLHQGSQQAGTSS
SGNQGSETSSSAGVSNDNLSRHHARLQAAASAASMYGKSMVYPSAKTVAWSPGIPGTEQV
STEPHRTQPSSFTPSPLPQHSLPGENSQAYANMSETKLEEMRKSLETHLEILRNRLHFLE
KRKPESTELTSEPDNKGKSVADAEE
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgatacgactaagaacatacgcaggccttagttttatagcgactctggctgtaatatat
catgccttcagcagtagaggccagttttatccagctacggtttatttatcaacctcaaag
atcagtttggtgttgcttctcaacatgtgtttggttcttatgcttagtctctggcatttg
gtcaaatttgtcttcttgggatcacttagggaagcagaagtcgagaggctgaatgagcaa
gcttggagagagcttatggagattctctttgctattactatctttcgacaggacttttct
agtgggtttcttcctttggttgtgactcttcttttgatcaaggctttacattggcttgct
cagaaaagagttgaattcattgagactactccttctgtttctaagctctctcatgttcgt
attgtctcttttatgggtttccttcttcttgtcgatagtctctttatgtacagttctgtt
cgtcacttgattcagactcgccaggcttccgtttctctcttcttctcattcgagtatatg
atcctggcgacaacaactgttgctatttttgtgaagtatgttttctatgtcactgatatg
atcatggatggtcaatgggagaagaaaccagtttatactttctatctggagcttattcgc
gacctgcttcacttgtccatgtatatctgcttcttctttgtcatattcatgaactatggt
gtgcctttacacttgttacgggagctctatgaaaccttcaggaacttccagattcgtgtt
tccgattaccttcgttatcgtaaaatcacgtccaatatgaacgacaggtttcctgatgca
actcctgaagaacttgttgcaagtgatgctacatgtatcatatgccgtgaagagatgaca
aatgcgaagaaactaatatgcgggcatctcttccatgtgcattgtcttcgatcatggttg
gagcgacagcagacttgtcctacttgcagagcacttgttgtacctcctgagaatgccaca
tctgcagccgcaggccaacgtggattacaccaaggttcccaacaggcaggtacgtcaagc
tcaggtaaccagggatctgaaacaagttcttctgctggcgtttccaatgataatttgagc
aggcaccacgccagacttcaagcagctgcttctgcagcctccatgtacgggaaatcaatg
gtttacccatctgcaaagacagtagcatggtcgccgggtattcctggtacagagcaagtg
tcaactgaaccacatcgaactcagccttcatcctttaccccgtctccacttcctcaacac
agccttcctggtgagaactctcaagcctatgcaaatatgtcagagactaagctggaagaa
atgagaaaatctctggagacccacctcgagattttgcgaaaccgacttcatttcctggag
aagaggaaaccggaatccaccgagcttacaagcgaaccagataacaaaggaaagtcggtt
gcggatgcagaagagtaa
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