Camelina sativa (false flax): 104784558
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Entry
104784558 CDS
T05044
Name
(RefSeq) pre-mRNA-processing protein 40B-like
KO
K12821
pre-mRNA-processing factor 40
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104784558
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104784558
Spliceosome [BR:
csat03041
]
Complex A
U1 snRNP components
U1 related factors
104784558
Complex B
104784558
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
HLH
Motif
Other DBs
NCBI-GeneID:
104784558
NCBI-ProteinID:
XP_010507899
LinkDB
All DBs
Position
1:complement(9073454..9083684)
Genome browser
AA seq
974 aa
AA seq
DB search
MANNPQYPGIQPFQHPNASSLEPPRGFAPSMNFQFRPTMQAPHPDQVTRLSSHNFQSVGR
GGTMMNIGYPPQSYAPQLLQSMHHSLERPSQLNQVQPVPLGPPSLISQPNVPIASGASMP
PPYVQTPDTSMPGFGGPRALFSYPSATSYEGSRAPTQVTGPSSHSQAQSSIMNPTFEPKA
ALFQSIPSQEALTDWVEHISPDGRKYFFNKRTKRSTWEKPVELMTLFERADARTDWKEHS
SPDGRKYYYNKITKQSTWTMPEEMKIAREQAEKASVQGPYAEGIIDASKVLSRSDIASTA
APTGLPTSDASENLALSSDLKQPASVPGSSSPVENVNGVQMTADKTSLLCDIAETDGPSV
TVTKTSAATLVKKDEILVGISGDSDDMSAKNTNEGSGTAPNESQKHMVESERVESQPEEK
QILQENFSCDNKLEPGDVFKSLLKSANVGSDWTWEQAMREIINDRRYGVLRTLGERKQAF
NEFLLQMKRSAEEERLARQRKRYDEFKRMLEECVELSPSTRWSKAVTIFEDDERFKAVER
EKDRRNIFEDHVNELKEKERVKALEDRKRNIIEYRRFLESCNFIKPNSQWRKVQDRLEVD
ERCSRLEKIDQLEIFQEYLRDLEREEEERQKIQKEELKKAERKHRDEFRGLIDEHIGTGE
LTAKTSWRDYLVKVKDLPVYSAITSNSSGATPKDLFEDAVEDLKRKYHDLKSQIKDVLKL
RKVTLSGGSTFDEFKVSISEDISVPPISDLKLKLVFDDLLERAKEKEEKEARKQTRQTEN
LVDMLRSFKDITASSSWEESKHLVEGSERCRAIGDESFRKHTFEDYVSHLKEKSKRIKQN
KKVPEDVREEHDKGRDKYGRERDRVRERDSEDHHKKGATDNHNHDMNEPHGRERRRSGRD
SHNRHRERHTSVKENDTDHLKESHKAGGGHKKSRQQRGLVPEAGDEGREKRRRKEEESEK
TKEEELEDGECGRY
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atggccaataaccctcagtatcctggcattcagccattccagcatcctaatgcgagttcc
ttagaaccaccccgaggctttgctccatctatgaactttcagtttcgtcctaccatgcaa
gctccacatcctgatcaagttactcgattgtcttctcataactttcaatctgtaggaaga
ggtggcacaatgatgaacattggatatccacctcaatcttatgcacctcagttattacaa
tcaatgcaccattcccttgaaagacctagccaattaaatcaggtgcaacctgtgccactt
ggacccccatctctaatttcacagccaaatgtgccaattgcttctggtgcctccatgcct
ccgccttatgtacaaactccagatactagtatgcctggctttggtgggcctagggcactc
ttttcttatccgagtgcaacatcttacgaaggttcgagggcaccaactcaagtcactgga
ccaagcagtcatagtcaggcacaatcttcaatcatgaatccaacatttgaaccaaaggca
gctctttttcaatctataccttctcaagaggctctaacagattgggttgagcatatctct
ccggatggaaggaaatattttttcaacaagaggacaaagcggtccacttgggagaagcct
gttgagttgatgactctttttgagagagcagatgcaagaacggactggaaagaacattca
agtcctgatggaagaaagtattattacaataagattaccaagcaatcaacatggacaatg
cctgaagagatgaagattgcgcgtgaacaagcagaaaaagcatctgttcaagggccttat
gctgaaggcattattgatgcttctaaggtgctgtctcgctctgatattgcatcgactgca
gctcctactggtctaccaacctcggatgccagtgagaacctagctctttcttctgatttg
aagcagccagcttcagttcctggaagttcttctccagtcgaaaatgtcaatggagttcag
atgactgcagataaaacatcactattgtgtgatattgccgaaactgatggtccttctgtc
actgtgacgaaaacttctgctgctacattggttaagaaggatgaaattttagttgggatc
agtggagattcagatgacatgtcagccaaaaacacaaatgaaggtagtgggactgcacca
aacgaaagccaaaaacatatggtggaaagtgaaagagttgagagccaaccggaagaaaaa
caaattcttcaagagaatttttcttgtgacaataaattggaacctggggatgtattcaaa
tcacttttgaaatccgccaatgttggatctgactggacatgggaacaggccatgagagaa
attattaatgacagaagatacggtgtgctgaggactcttggagagcgtaaacaagccttc
aatgagttcttacttcaaatgaaaagatcagctgaagaggaaaggctagccagacagaga
aaacggtatgatgaatttaaaaggatgttagaggaatgtgtggagctttccccttctact
cggtggagcaaggctgtgacaatttttgaagacgatgagcgtttcaaagctgttgaaaga
gaaaaagaccgtcgtaatatttttgaagatcatgtcaatgagctaaaggagaaggagcgg
gtgaaagctcttgaggatcgcaagcggaatataattgaatacagaagatttttggaatct
tgcaatttcatcaagcctaatagtcaatggcgcaaagttcaggaccgactagaagtggat
gaacgatgttcgcgccttgagaaaattgatcagctggaaatctttcaggagtatctgcgt
gatctggagagggaagaagaggagagacagaagatacagaaggaggaactcaaaaaagca
gagcgaaagcatcgtgatgagttccgtgggctgatagatgaacatattggaacaggagag
cttactgccaaaaccagttggcgtgattatttagtgaaggtcaaagatttaccagtatat
tcagcaattacgtcgaattcatctggagctactccaaaagacttatttgaagacgctgtt
gaggatttgaaaagaaagtaccacgatctcaagtctcagataaaggatgtattgaagttg
agaaaggtaacattatccggtggatcaacatttgatgagttcaaggtctcaatttccgag
gatatcagtgtcccgcctatttcggaccttaaactaaagttagtttttgatgatttgctg
gaaagggcaaaggagaaggaagaaaaagaagccagaaaacagacacggcagactgaaaac
ttggtggatatgcttcgctccttcaaggatataactgcctcttcatcctgggaggaatca
aagcatctcgttgaaggtagtgaaagatgccgtgctattggcgatgagagctttcggaag
catacattcgaagattatgtatctcacctcaaagagaaatcaaaaaggatcaaacagaac
aagaaggtacctgaggatgtgagagaggaacatgacaaggggagagataagtacggaaga
gaaagggacagagtccgagaaagagacagtgaggatcatcataagaaaggtgcaactgat
aatcacaaccatgatatgaatgaaccccatggaagagaacgtagaagatcaggaagagat
agccataacagacatcgagaaagacatactagtgtgaaggaaaatgacacagaccatctc
aaagaatcccataaagctggtggtggccacaagaaatctagacaacagcgaggtttggtc
cctgaagcaggggatgaaggcagggaaaagcggcgtagaaaagaggaggagagtgagaaa
acaaaggaagaggagcttgaagatggagaatgtggtaggtattga
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