Camelina sativa (false flax): 104786282
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Entry
104786282 CDS
T05044
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat04120
Ubiquitin mediated proteolysis
csat04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104786282
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
104786282
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
csat04121
]
104786282
Enzymes [BR:
csat01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104786282
Ubiquitin system [BR:
csat04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104786282
Multi subunit Ring-finger type E3
Cul4 complex
Target recognizing subunit (DCAF)
104786282
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
zf-C3HC4_2
WD40_like
zf-C3HC4
zf-C3HC4_3
zf-RING_2
zf-RING_UBOX
zf-C3HC4_4
U-box
zf-RING_5
YpoC
YbfN
zf-RING_10
zf-RING_6
DUF1664
Prok-RING_4
Baculo_p24
Motif
Other DBs
NCBI-GeneID:
104786282
NCBI-ProteinID:
XP_010509945
LinkDB
All DBs
Position
5:complement(9123520..9129174)
Genome browser
AA seq
678 aa
AA seq
DB search
MEDISTDPLVPAVKPDPMRTSSAGGGEGANRIENDDGGSGGSEIGAPDLDKDLLCPICMQ
VIKDAFLTACGHSFCYMCIITHLRNKSDCPCCSQHLTNNQLYPNFLLDKLLKKTTARHVS
KTATPLDQFREALQRGCDVSIKEVDGLLTLLAERKRKMEQEEAERNMQILLDFLHCLRKQ
KVDELNEVQTDLQYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDPSTRNAWPHEKNHS
GFNSNSLSIRGGNLLGNYQNKKVEGKPQGSSHGLPKKDVLSGSDSQSLNQSTVSMARKKR
IHAQFNDLQECYLQKRRQLVDQPNSKQENDKSVVRREGYSNGLADFQSVFTTFTRYSRLR
VIAEIRHGDIFHSANIVSSIEFDRDDELFATAGVSRCIKVFDFSSVVNEPADMQCPIVEM
STRSKLSCLSWNKHEKNHIASSDYEGIVTVWDVTTRQSLMEYEEHEKRAWSVDFSRTEPS
MLVSGSDDCKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAVGSADHHIHYYDLRN
ISQPLHVFSGHKKAVSYVKFLSNNELASASTDSTLRLWDVKDNLPVRTFRGHTNEKNFVG
LTVNSEYLACGSETNEVYVYHKEITRPVTSHRFGSPDMEDAEEEAGSYFISAVCWKSDSP
TMLTANSQGTIKVLVLAA
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggaagatatttcgacggatccgcttgttccggcggtgaaacctgacccgatgaggaca
tcatcagctggtggcggcgaaggtgctaaccgtattgaaaatgacgacggaggaagcggt
ggttctgagattggagcgccggatctggataaagacttgctatgtccgatttgtatgcag
gttatcaaagatgctttcctgacggcgtgtggtcatagtttctgctatatgtgtatcatc
actcacctcaggaacaagagtgattgtccttgttgtagccaacatctcaccaataatcag
ctttaccctaatttcttactcgataagctattgaagaaaaccacagctcggcatgtgtca
aaaactgcaacgcccttggatcagtttcgggaagcattacaaaggggttgtgatgtgtca
attaaggaggttgatggtcttcttacacttcttgcggaaaggaagagaaaaatggaacag
gaagaagctgagaggaacatgcagatactcttggactttttacattgtttaaggaagcaa
aaagtcgatgaacttaatgaggtgcaaactgatctccagtatatcaaagaggatataaat
gccgttgagagacatagaatagatttataccgagctagggacagatattctgtgaagttg
cggatgctcggagatgatccaagcacaagaaatgcatggccacatgagaagaatcacagt
ggtttcaactccaattctctgagcataagaggaggaaatttgttaggcaattatcaaaac
aaaaaggtagagggaaagccacaaggaagctctcatgggctacccaagaaggacgtactg
agtgggtcagattcccaaagtttgaatcagtcaactgtctctatggctagaaaaaaacgg
atccatgcgcagttcaatgatctacaagaatgttacctccaaaagcggcgtcagttggta
gaccaaccaaatagtaaacaagaaaatgataagagtgtagtacggagggaaggctatagc
aacggccttgcagattttcaatctgtgtttactaccttcactcgttacagtcgtctaaga
gtcatagcagaaatccggcatggggatatatttcattctgccaacattgtatcaagcata
gagtttgatcgtgatgatgagctgtttgccactgctggtgtttctagatgtataaaggtt
tttgacttctcttcggttgtaaatgaaccagcagatatgcagtgtccgattgtggagatg
tcaacacggtctaaacttagttgcttgagttggaataagcatgagaaaaatcatatagca
agcagtgattatgaaggaatagtaacggtgtgggatgtaactactaggcagagtcttatg
gagtatgaagagcacgaaaaacgtgcatggagtgttgacttttcacgaacagaaccatca
atgctcgtatctggtagtgatgattgcaaggttaaagtatggtgcacaaggcaggaagca
agtgtgcttaatattgatatgaaagcaaacatatgttgtgtcaagtacaatcctggctca
agcaactacattgcggtcggatcagctgatcatcacatccattattacgatctaaggaac
ataagccaaccacttcatgtcttcagtggacacaagaaagcagtttcttatgttaaattt
ttgtccaacaacgagctcgcttctgcatccacagatagcacactacgcctatgggatgtc
aaagacaacttgccagttcgaaccttcagaggacacactaatgagaagaactttgtgggt
ctgacagtaaatagcgagtatcttgcctgtggaagcgagacaaacgaagtatatgtatat
cacaaggagatcacgagaccggtcacttcgcacagatttggatcaccagacatggaagat
gcagaggaagaggcaggttcctactttataagtgcggtttgctggaaaagtgatagtccc
acgatgctgactgcgaatagtcaaggaaccatcaaagttctggtactcgctgcgtga
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