Thermoclostridium stercorarium subsp. stercorarium DSM 8532: Clst_1550
Help
Entry
Clst_1550 CDS
T02527
Symbol
ligD2
Name
(GenBank) LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
csd
Thermoclostridium stercorarium subsp. stercorarium DSM 8532
Pathway
csd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
csd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Clst_1550 (ligD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csd03400
]
Clst_1550 (ligD2)
Enzymes [BR:
csd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Clst_1550 (ligD2)
DNA repair and recombination proteins [BR:
csd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Clst_1550 (ligD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AGI39605
UniProt:
L7VQ94
LinkDB
All DBs
Position
complement(1732804..1733715)
Genome browser
AA seq
303 aa
AA seq
DB search
MDWFEPMEPILTNTIMKGDQWIHQVKWDGIRCLAYKDGNNVRLFTKRGRERSRWYPEITK
EILDLNCKQVVLDGELIVPDEYGKPSFHNIMARDRVSRIDRLRQYIEKYPVWYMVFDILC
KEGQDLRVLPLLERKRMLDETLKSNGNVQAVSDYSDGEALFSIMKEKDMEGIVSKKADSP
YIGGKKHKMWFKTKIIKQMTATVCGVKVKDYRVKSLVIAENRDGKLVPVGNVSSGLSDKD
KITLFNVLPQLAADAAGLYGNVKSDDVIWVKPVLKVIVSFIEREENGSLRHPVLVGFTDE
KTE
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atggattggttcgagccgatggagcccatacttacaaatactataatgaagggagaccaa
tggattcaccaggtaaaatgggacggaataagatgtctggcatataaagacggcaataat
gtcaggctgtttaccaaacgaggccgtgaacgttcccggtggtaccctgaaataacaaag
gaaattttagatctgaattgcaaacaggtggtactggacggcgaactgatagtaccggac
gagtacggaaaaccttcatttcataatattatggcaagggacagagttagtagaattgat
aggctcagacagtacatcgaaaaatatcctgtatggtatatggtttttgacatactgtgt
aaagaaggtcaggatttaagggtgcttccgctgcttgaaagaaaaagaatgcttgatgaa
acgttaaaaagcaatggcaatgttcaggctgtttccgattattccgatggagaagctctg
ttttcaataatgaaggaaaaggacatggagggcattgtatcaaaaaaagccgacagccct
tatatcggcgggaaaaaacataaaatgtggtttaaaacgaaaataataaagcaaatgacc
gcaacggtgtgcggggtcaaagtaaaggattacagggttaaatcccttgttattgcggaa
aaccgtgacgggaaacttgtgcctgtcggaaacgtatcgtcgggcttatccgataaagac
aaaataacccttttcaatgttcttccacagcttgccgcagatgcggcaggtttgtacgga
aacgtaaaaagcgatgatgtgatttgggtaaaaccggttcttaaagttattgtctcattt
atcgagcgggaagaaaacggaagcttgagacatccggttttggtgggttttaccgatgag
aagacggagtag
DBGET
integrated database retrieval system
