Cynoglossus semilaevis (tongue sole): 103394269
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Entry
103394269 CDS
T04866
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem03015
mRNA surveillance pathway
csem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103394269
09123 Folding, sorting and degradation
03018 RNA degradation
103394269
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csem03019
]
103394269
03041 Spliceosome [BR:
csem03041
]
103394269
Messenger RNA biogenesis [BR:
csem03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
103394269
mRNA cycle factors
Stress granule specific factors
103394269
Spliceosome [BR:
csem03041
]
Complex C
Other components
Complex C specific factors
103394269
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_5
RRM_occluded
RRM_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
103394269
NCBI-ProteinID:
XP_008329721
UniProt:
A0A3P8WH02
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All DBs
Position
18:9239671..9246624
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AA seq
633 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALFDTFS
AFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAREFTNVYIKNFGEDMDDEKLREVFSKYGSAMSIRVMMDDNGKSRGFGFVGFER
HEDAQKAVDEMNGKELNGKLIYVGRAQKKIERQTELKRRFEQMKQDRMTRYQGVNLYVKN
LDDGIDDERLRKEFAPFGTITSAKVMTEGGRSRGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVINPYQPAPPSGYFMAAIPQAQNRA
AYYPATGQMAPLRPSPRWATQGVRHQQFQNMPATMRPSAPRPQGLNTMRPASVPRMMSTQ
RMATQSMGARTTSAPTAMSNQVRGVPQYKYAPGVRNPQQHMSNQPPVNMQQPAVHVQGQE
PLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPESL
RSKVDEAVAVLQAHQAKEAAQKPGTNPAVVPSV
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgaatcctagcgccccaagttaccccatggcctctctgtacgtcggagacctgcaccca
gatgtgaccgaggccatgctgtacgagaagttcagtcctgccggagcgattctatccatc
cgggtgtgtagagacatgatcaccagacgctccctcggatatgcctacgtcaatttccag
caaccagcggatgccgaacgtgctttggacacaatgaacttcgatgtaatcaaggggcaa
ccagtgagaatcatgtggtcgcagcgtgatccgtccctgaggaagagtggtgttggaaac
atcttcatcaagaacctggacaagtccatcgacaacaaggccctcttcgacacattctct
gctttcggcaacatcctgtcatgcaaggtggtttgtgatgaaaatggctctaaaggctat
ggctttgtgcattttgagactcacgaggcagctgaacgagccattgagaaaatgaatggc
atgttgctgaatgaccgaaaagtatttgttggccgctttaagtctcgcaaggagcgtgag
gctgagctcggtgcccgagccagagagttcacaaacgtctacataaaaaactttggtgaa
gatatggatgatgagaagctgagagaggtctttagcaaatatggatctgccatgagtatc
cgtgtcatgatggacgacaacggaaaatcccgaggttttgggtttgttggtttcgagagg
cacgaggacgcacagaaggcggtggatgagatgaacgggaaggaactgaacggcaaactg
atctatgtcggtcgagcacagaagaaaattgagcgacagacagaactgaaacgcaggttc
gagcaaatgaaacaggatcgcatgacccgctaccagggagtcaacctgtatgtgaaaaac
cttgatgacgggatcgacgacgagcgactgcggaaggaatttgcaccgtttggtaccata
accagtgccaaggtgatgacggagggtggacgcagcaggggctttggttttgtctgcttc
tcctcaccagaggaggccaccaaagcagtgactgagatgaacggacgcatcgtggccacc
aagcccctgtacgtggccctggcccagaggaaggaggagcgacaggcccatctgaccaac
cagtacatgcagcgcatggccaccgtacgtgcagtcccaaacccagtcataaacccctac
cagccagccccgccctctggatacttcatggcagccatacctcaggcccagaatcgtgct
gcttactacccagcaacgggacagatggctccactgcggcccagtccacgatgggccact
caaggagtccggcaccaacaattccagaacatgccggcaactatgcgtccctcagcgccc
agaccccagggcctcaacaccatgagacctgcgtctgtgcctcgcatgatgtcaacccaa
cgcatggccactcagtccatgggggccagaaccaccagtgctcccaccgccatgtccaac
caagtgcgtggagtccctcagtacaagtacgctcccggggtccgcaatcctcagcagcac
atgagcaaccagccaccggtgaacatgcagcagcctgctgttcatgttcaaggtcaggag
cctctgactgcttccatgctggctgctgctcctccacaggagcagaagcagatgctgggt
gagcgcctgttcccactgatccagaacatgcatcccagtctggcagggaaaatcactgga
atgctactggagattgacaactcagagctgctccacatgctggagtctccagagtctctg
cgctccaaggtggatgaagctgttgctgttctccaggcccaccaggccaaagaagctgcc
cagaagcccgggacaaacccagctgttgtcccaagtgtctga
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