Cylindrospermum stagnale: Cylst_3453
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Entry
Cylst_3453 CDS
T02398
Name
(GenBank) RNA polymerase, sigma subunit, RpsC/SigC
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
csg
Cylindrospermum stagnale
Brite
KEGG Orthology (KO) [BR:
csg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csg03021
]
Cylst_3453
Transcription machinery [BR:
csg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Cylst_3453
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
LexA_DNA_bind
HTH_28
Motif
Other DBs
NCBI-ProteinID:
AFZ25602
UniProt:
K9X1J5
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Position
complement(3939323..3940561)
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AA seq
412 aa
AA seq
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MPATSFYADAAFGTPKSRRNLDHDLSVDEGELSVDDLHELEMASVDPANTNRRSTDLVRL
YLQEIGRVRLLGRDEEVSEAQKVQRYLRMRTVLANAAKQGDEVIVPYLRLIEVQERLSSE
LGHRPSLERWATTAGIELPDLKPTLANGKRRWAETAKLTVEELDQVQSQGLQAKEHMIKA
NLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRA
IATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAIELEMTPAQVREVLLRVP
RSVSLETKVGKDKDTELGELLETDCVTPEEMLMRESLQRDLHNLLDDLTSRERDVILMRF
GLSDGHPYSLAEIGRALDLSRERVRQIESKALQKLRQPKRRNLIRDYLESLS
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgccagcaacttctttttacgcagatgccgccttcggtaccccaaagtcccgtcggaac
ttagaccatgatctttcggttgatgagggtgaattgtcggtagatgatttacatgaacta
gagatggcttctgttgaccctgctaacactaaccgtcgtagtacagacttagtgcgccta
tatcttcaggaaatcggtcgagttcgcttgttagggcgggatgaagaggtttccgaagct
caaaaagttcagcgctacttgcggatgcggacagtgcttgcaaacgccgccaagcaagga
gatgaagtgattgtgccctatctccggttaatagaagttcaggaacgtttgtcttctgaa
ctcggacatcgcccgtccttggaaagatgggctaccactgctggtatagaattaccggat
ctcaaaccaactttagcaaatggcaagcgtcgctgggcagaaactgccaagctgacagtg
gaagaactggatcaagttcaatcccaaggactccaagctaaagaacacatgatcaaggct
aatcttcgcctagtagtttctgtagccaagaaatatcaaaatcgtggtttggaactgtta
gatttagtccaagaaggtaccctaggtttagaacgagcggtggaaaaatttgaccccacc
aaaggttatcgctttagtacctatgcctattggtggattcgtcagggaattacaagagcg
atcgctacttcaagccgcacgatccgcctgcctgttcacattacagaaaaactgaacaaa
atcaaaaaagcccaacgcaaaattgctcaagaaaagggtcgcactcccaccttagaagac
ctggcaattgagttagaaatgacacctgctcaagtacgggaagttttgttaagggtgcct
cgttctgtttctctagaaactaaggtaggaaaggataaagatacagagttaggggaatta
ctcgaaaccgactgtgtgacaccagaagaaatgttaatgcgagaatctttacaaagagac
ttgcacaatcttttggatgatttaactagccgtgaacgcgatgtaattctcatgcggttt
ggtttgtcagatggtcatccttactcgttagcagaaattggacgtgctctcgacttatcg
cgggaacgagtacgacaaattgaatcaaaagctctgcaaaagctgcgccaacccaagcga
cgtaacctcatccgtgactacttagaatccttaagttag
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