Clostridium saccharolyticum WM1: Closa_3638
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Entry
Closa_3638 CDS
T01288
Name
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
csh
Clostridium saccharolyticum WM1
Pathway
csh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
csh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Closa_3638
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csh03400
]
Closa_3638
Enzymes [BR:
csh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Closa_3638
DNA repair and recombination proteins [BR:
csh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Closa_3638
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
ADL06161
UniProt:
D9RAW4
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All DBs
Position
3946481..3947407
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AA seq
308 aa
AA seq
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MMDLFDLKNVSPMLISEMADPFDSPDHIFEIKWDGIRCISFLNTETDMRNKRNKLMIPIF
PELANLHKQVKEKCILDHELLVIKNGIPDFYEVQNRALRTNSFKIKLAADRYPASIIAYD
ILYYKDKDITMLPLMERKKYLTDVVIENQLISVSRYVENDGVKLFELVKEKNLEGIIAKR
KDSLYWQGKRTRDWVKCKIMSSDDCVICGYIPKENNMTSLILGQYDEDVLVYKGHVTLGV
SLRILNQHKYKVIDYSPFGYIPHGNEEAVWLAPELVCIVESMPTEKETFRQPVFKGIRDD
KLAIECKI
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atgatggatctgtttgatttgaaaaatgtaagtcccatgctgatctcggaaatggccgat
ccgtttgattcacctgatcatatttttgaaatcaaatgggatgggatcagatgcatatcc
tttttaaatacggaaacagatatgaggaataaaagaaataaattaatgatccccatcttc
cccgagcttgcaaacctccacaagcaagtaaaggaaaagtgtatccttgaccacgaatta
ctcgtaattaaaaacggtatccctgatttttatgaagtgcaaaatcgtgctttgaggaca
aactcttttaaaataaaactggcggctgacagatatccggccagcatcattgcttatgat
attttatattacaaagataaagatattaccatgctcccgcttatggagcgtaaaaagtat
cttaccgatgttgtaattgagaatcaattaatttctgtttcaagatatgtagagaacgat
ggagttaaattatttgaacttgtaaaagaaaaaaacctggaagggatcatagcaaaaaga
aaagatagtctgtactggcagggcaaacgtacgagagattgggtaaaatgcaagataatg
tcctcagacgattgtgtcatctgcggatatatcccaaaagaaaataatatgacgagcctt
atcctgggacaatatgatgaagatgtgcttgtatataagggccatgtcacccttggtgtt
agccttagaatccttaatcagcacaaatataaagtgattgattactcacctttcggttat
ataccccatggaaacgaggaagccgtatggctggcacctgagcttgtttgtatcgtagaa
tcaatgccgaccgaaaaagaaaccttccggcagccggtattcaaaggaattcgggacgat
aaattagcaatcgaatgcaaaatatag
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