Cronobacter sakazakii ATCC 29544: CSK29544_02888
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Entry
CSK29544_02888 CDS
T03903
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
csj
Cronobacter sakazakii ATCC 29544
Brite
KEGG Orthology (KO) [BR:
csj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
csj03016
]
CSK29544_02888
Enzymes [BR:
csj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CSK29544_02888
Transfer RNA biogenesis [BR:
csj03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CSK29544_02888
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
ODP
PilZ
Motif
Other DBs
NCBI-ProteinID:
AKE95839
LinkDB
All DBs
Position
complement(2994524..2996458)
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRV
IAVIHTEKEKESAEPEELIEPFLTRFVGRVQKKDDRLSIVPDHPLLKDAIPCRAERGVSH
DFQNGDWAVAEMRRHPLKGDRGFYAELTQFITFGDDHFVPWWVTLARHNLEREAPDGVAT
EMLDENLTREDLTALDFVTIDSASTEDMDDALYVEALDGDRLQLTVAIADPTAWIAEGSK
LDNIAKVRAFTNYLPGFNIPMLPRELSDDLCSLREGVQRPALVCRMIIEADGAISDDIHF
FAAIIESKAKLAYDDVSDWLEEKGDWQPGSEAIAAQIRLLQQICQRRSAWRTEHALVFKD
RPDYRFVLGEKGEVLDIVAEPRRIANRIVEESMIAANICAARVLRDKLGFGVYNVHAGFD
PASTEQLATLLQSHGMHVDANDVLTLPGFCKLRRELDAQPSGFLDSRIRRFQSFAEISTE
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAIIKGESATRPQDEATVQMAERRRLNRM
AERDVGDWLYARFLKDKAGTDTRFAAEIIDVSRGGMRVRLVDNGAVAFIPAPFLHAVRDE
LVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSVIARPVA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaggataacccgctgcttgcgcagcttaaacagcaactgcattcccagacgccg
cgcgccgaaggggtagtaaaagccacggaaaaaggttttggtttccttgaggttgacgcg
cagaaaagctacttcattccgccgccgcagatgaagaaagtgatgcacggcgatcgcgtc
attgccgttatccatacggaaaaggaaaaagaatccgccgagcccgaagagcttatcgaa
cccttcctgacccgctttgtgggccgggtgcaaaagaaagacgatcgtctctcaatcgtt
cccgatcatccgctgctgaaagacgccatcccgtgccgcgctgaacgcggcgtcagccac
gatttccagaatggcgactgggcggtggcggaaatgcgccgccatccgctgaaaggcgat
cgcggtttctacgcggaactgacacagtttattaccttcggcgacgaccatttcgtgccg
tggtgggtgacgctggcacgccacaatcttgagcgcgaagcgccggacggcgtggcgacc
gaaatgctggatgaaaacctgacgcgtgaagatttaaccgcgctggatttcgtcactatc
gacagcgccagcaccgaagatatggacgatgcgctgtatgtggaagcgctggatggcgac
cgcctgcaactgaccgtcgcgatcgccgacccgaccgcgtggatcgccgaaggcagcaag
ctcgacaacatcgctaaagtgcgcgcgttcaccaattacctgccgggctttaacatcccg
atgctgccgcgcgagctgtctgacgacctctgctcgctgcgcgaaggcgtgcagcgccct
gcgctggtctgccgcatgattatcgaagccgatggcgccatcagcgatgacattcacttc
ttcgccgctatcatcgaatcgaaagccaagctggcctatgacgacgtttccgactggctg
gaagaaaaaggcgactggcagccgggcagcgaggcgattgccgcgcagatccgcctgctg
caacagatttgccagcgccgcagcgcctggcgtactgaacacgcgctggtgtttaaagac
cgcccggattaccgctttgtgctgggcgagaaaggcgaagtgctggatatcgtcgccgag
ccgcgccgcatcgctaaccgtatcgttgaagaatcgatgatcgccgcgaacatctgcgcc
gcgcgcgtgctgcgcgacaagctcggcttcggcgtttataacgtccacgcgggctttgac
ccggcgagcaccgaacagctggcgacgctgctgcaaagccacgggatgcatgtggatgcg
aacgacgtactgacgctgccgggcttctgcaagcttcgccgcgagctggacgcacagccg
tccggtttcctcgacagccgcatccgccgcttccagtcgtttgctgaaatcagcaccgag
ccaggcccgcacttcggcctcggccttgaagcctatgcgacctggacttcgccgattcgt
aaatatggcgatatggtcaaccaccgcctgctgaaagccatcattaaaggcgaaagcgct
acgcgtccacaggatgaagccaccgtgcagatggccgagcgtcgtcgtcttaaccgcatg
gcggagcgcgatgtgggcgactggctgtatgcccgtttcctgaaagacaaagccggcacc
gatacccgcttcgcggcggaaattatcgatgtcagccgcggcggcatgcgcgtgcgtctg
gtggataacggcgcggtcgcctttattcccgcaccgttcctgcacgcggtgcgcgatgag
ctggtctgcagccaggaaaacggcaccgtacagatcaaaggcgaaaccgtttataaagtc
accgacgttatcgacgtgaccatcgccgaagtgcgtatggaaacccgcagcgtcatcgca
cgcccggtcgcctga
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