Coccomyxa subellipsoidea: COCSUDRAFT_39322
Help
Entry
COCSUDRAFT_39322 CDS
T02914
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
csl
Coccomyxa subellipsoidea
Pathway
csl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
COCSUDRAFT_39322
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csl03021
]
COCSUDRAFT_39322
03019 Messenger RNA biogenesis [BR:
csl03019
]
COCSUDRAFT_39322
Transcription machinery [BR:
csl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
COCSUDRAFT_39322
Messenger RNA biogenesis [BR:
csl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
COCSUDRAFT_39322
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
DAPG_hydrolase
Motif
Other DBs
NCBI-GeneID:
17045752
NCBI-ProteinID:
XP_005652281
JGI:
39322
UniProt:
I0ZAR8
LinkDB
All DBs
AA seq
567 aa
AA seq
DB search
MDAQELREFMAQYVSELADLTFNSKPIINTLTMLASENVKAASSIAAAIEKHILKCSPTH
KLYGLYLMDSIIKNVRQPYTSLFSRTLPEVYMNAWSAAPQSRPQLQKLFNFWKGHLPDQT
LAAITKRQGAQQAPLPAPPSPQPQLGPAAGYGAAAPFAAPPSPPSRPTSAGPQAPGVQQF
PPGHSLYPAAAGIAQPYAAVQLQQFPPPPPPRQPSPQAPQPADAFPGFPQLPGPAQPSAA
VMAALQAALAKKQQQQSGNAARQQPAASSVSEDDYWAGLEPDELPLKTVDERKMGFDSER
LKAQSPAVLKELMACTVALRHRHLDRMFHHRRRTRGAGRRVLSQQWYVRADDWIAGTAAD
AQAAPAFFDLPEGREPVKKETTSVPVDDAQPNCALSGERFETFWDDASDEWRYKDALRLD
ADQAARYGLHEGVIVKVTALSAGPDPVLEEQAAAEGQSEEPAAAAAPAPEAPEPAAASTS
KASEAPAPSNEVGPSVAVKTEPEAAAAAEDAAMEAADQVEGADQQEAASSVLETVEASGQ
LSAGVTVKRESDEQLPRRRSKRLKQDP
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atggacgctcaggagctcagggaattcatggctcagtacgtgtccgagctggcggatctg
acgttcaactccaagccaatcatcaacacgttgacgatgctggcaagcgaaaacgtcaag
gcggcttccagtatagctgcagctatcgagaagcacatcctgaagtgctctccaacgcat
aagctctatggcctctacttgatggacagcatcatcaagaatgtgagacaaccatacacg
tccttgttctcacgcaccctaccagaggtttacatgaacgcttggagtgcagccccgcag
tccagacctcaactgcagaagctgttcaatttctggaaaggccacttgccggaccaaact
ttggcagccatcaccaagcggcaaggggcccagcaggcgcccttgccagcaccgccatcc
ccgcagccacagctggggcccgcggcaggctacggagcggctgcacccttcgcagcgcct
ccctcgcctccatcccgtcccacaagcgcaggacctcaagcgccaggtgtacagcagttt
cctccaggacattccttgtacccggcagcagctggcattgcgcagccgtatgcagctgtg
cagctgcagcagtttccgccaccgccgccgccgcggcagccgtcgccgcaggcgccgcag
ccggcagatgcatttcccggcttcccgcagcttccagggccggcgcagccgagcgcagcg
gtcatggcagcgctgcaagctgccctggcgaaaaagcagcagcagcagtcggggaacgcc
gctcggcagcagcctgccgccagcagtgtcagcgaggatgactactgggcaggtcttgag
cctgatgagctacccctgaagaccgtggacgaaaggaagatgggctttgattcggagcgc
ctcaaggcacagagcccagctgttctgaaggagctcatggcgtgcacggtggcgctgcgg
caccgccacctggacagaatgttccatcaccggcggcgcacgcgcggggccggccgccgg
gtgctgagtcagcagtggtacgtgcgcgcggatgactggatcgccggcaccgccgccgac
gcgcaggccgcccccgccttctttgaccttccggaggggagggagcctgtgaagaaggag
actaccagtgtgccagtggacgacgcgcagccaaattgcgcgctgagtggggagcgcttt
gagacgttctgggacgacgccagcgacgagtggcgctacaaggacgctctccgcctggac
gccgatcaggccgccaggtatgggctgcatgagggggtcattgtgaaggtgacagcgctg
agcgctggccccgacccggtcttagaggagcaagccgcagcagagggccaatcagaagag
ccggctgcagcggcagcaccggccccagaagcacccgagcccgcagctgcaagcacatca
aaggcgagtgaggctccggcaccttcaaacgaggtggggccgagcgtggcagtgaagaca
gagcccgaggcggcagcagctgcggaggatgctgcaatggaagccgccgaccaagtggag
ggggctgatcagcaggaagctgcctcgagcgtattggagaccgtggaagcttcagggcag
ctgtcggctggcgtcacagtgaagagggagtctgatgagcagctgcccagaaggaggtcc
aagcggctcaagcaggacccatga
DBGET
integrated database retrieval system
