Coccomyxa subellipsoidea: COCSUDRAFT_43243
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Entry
COCSUDRAFT_43243 CDS
T02914
Name
(RefSeq) RNA-binding domain-containing protein
KO
K13126
polyadenylate-binding protein
Organism
csl
Coccomyxa subellipsoidea
Pathway
csl03015
mRNA surveillance pathway
csl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
COCSUDRAFT_43243
09123 Folding, sorting and degradation
03018 RNA degradation
COCSUDRAFT_43243
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csl03019
]
COCSUDRAFT_43243
03041 Spliceosome [BR:
csl03041
]
COCSUDRAFT_43243
Messenger RNA biogenesis [BR:
csl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
COCSUDRAFT_43243
mRNA cycle factors
Stress granule specific factors
COCSUDRAFT_43243
Spliceosome [BR:
csl03041
]
Complex C
Other components
Complex C specific factors
COCSUDRAFT_43243
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_7
MARF1_RRM1
Motif
Other DBs
NCBI-GeneID:
17039525
NCBI-ProteinID:
XP_005646085
JGI:
43243
UniProt:
I0YT22
LinkDB
All DBs
AA seq
537 aa
AA seq
DB search
MAVQGTNGGGPGAQEAVNPATESCSVFVNGLSLEVSSETLKEVFGRVGRVASAVVMRDHF
GASRGFGFVNFTKADEADRAIQQFNKIPHCAGTWLVRKAEKRKPEQKAGQVSEQGLDLCN
LFIRGVEPEISSIRLQSMFEAFGKVVSSKILVDPKTGASKCAGFLRFTLPEEAARAIHEM
NGKQVGSKRLFVTLAQKRATTDPQGIIHPPFEQSAAQPSTPTGMAYFMPMSGMAPQYPQG
AHGHPAFQPYGMYPPGMVPIHPQAYQQGYGPPPQLVWQGMPMAAFQGMPPGYQQADPRAI
SRQQQAQQYYMMTSGQDGTYFDMASNSFMHSGRGYRSHMGRGAATPRGGGRRGRQLFPEP
PASNHLGQPRAPVKVPLTVNSKPVARRDVAPGAAPKDAPTNTKDLVARLAATPDKLVRVS
MMGDLLFTLVQGLQPAKDSAKITGMLLEMTEPEILHILEDRAALIKKARHPSHSGICSVD
EALGVLKAAGYKEAKQQVPKELPSTPKSASEEPKAAPASDAAQSSAPSEGLEKLRLA
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atggctgtccaaggcacgaatgggggtgggccaggcgcgcaggaggcagtgaacccagct
actgagagctgcagtgtgtttgtcaatgggctttcgctcgaggtgagcagtgagactctc
aaagaggtgtttgggagggtggggagagtggcgtctgccgttgtcatgcgcgaccacttt
ggggcgagccgcgggtttggattcgttaatttcaccaaggcagacgaggcagacagggca
atccagcagttcaacaagatcccccattgtgcagggacttggctggtgcgcaaggctgag
aagaggaaaccagagcagaaagccgggcaggtcagtgagcaaggcctggatctgtgcaat
ctcttcattcggggcgtggaaccagagatctccagcatcaggctgcagagcatgtttgag
gcgtttggaaaagtggtctccagcaagatccttgtcgatccaaagacgggcgcaagtaaa
tgcgcgggattccttcgtttcaccctccctgaagaagctgccagggccatccacgagatg
aatggcaaacaggtgggcagcaagaggctgtttgtgacactggctcagaagcgtgcaacg
acagatccccagggtattatacacccaccctttgaacagagcgccgctcagcctagcacc
cctactggcatggcatatttcatgcccatgtccggcatggctccccaatatccccagggc
gctcatggccatcccgcattccaaccatatggcatgtacccgccgggcatggtgcccatt
cacccgcaggcttaccagcaggggtacgggcctccgccgcagttggtctggcagggaatg
cccatggctgcgttccagggaatgccgcccggataccagcaggccgatccgcgcgcgatt
tcccgccagcagcaggcgcagcagtactacatgatgacgagcggccaggacggaacctac
tttgacatggccagcaacagctttatgcacagcggccgcggctaccgctcccatatgggc
cgcggagccgccacccctcgcggcggcggccgccgcggccgccagctcttccccgaaccc
ccggcctccaaccacctcggtcagccgcgtgcgcctgtgaaggtgcccctgacggtgaac
tcaaagccggtggcgcggcgggacgtggcgccgggagctgcgccaaaggacgcgccgacc
aacaccaaagacctggtggcgcggttggccgccactccggacaagcttgtgcgcgtcagc
atgatgggggatctgctgttcacgctggtgcaagggctgcagccggccaaggacagcgcc
aagatcacgggcatgctgctggagatgaccgagcccgagatcctgcacatcctggaggac
cgcgccgccctcatcaaaaaggcacgccatccctcccactccggcatttgttcagttgat
gaagctctgggagtgctgaaggcagctggctacaaggaggccaagcagcaggttcccaag
gagctgcccagcaccccaaagagcgcctcagaagagcccaaggccgccccggcatcagat
gcagctcagagcagcgctccatcagaggggctggagaagctgaggctcgcatga
DBGET
integrated database retrieval system
