Coccomyxa subellipsoidea: COCSUDRAFT_65794
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Entry
COCSUDRAFT_65794 CDS
T02914
Name
(RefSeq) P-loop containing nucleoside triphosphate hydrolase protein
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
csl
Coccomyxa subellipsoidea
Pathway
csl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
COCSUDRAFT_65794
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csl03041
]
COCSUDRAFT_65794
Spliceosome [BR:
csl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
COCSUDRAFT_65794
Complex C
U5 SnRNP specific factors
COCSUDRAFT_65794
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
MMR_HSR1
TniB
Motif
Other DBs
NCBI-GeneID:
17042202
NCBI-ProteinID:
XP_005648748
JGI:
65794
UniProt:
I0Z0N5
LinkDB
All DBs
AA seq
976 aa
AA seq
DB search
MDDSLYDEFGNYIGPELSGSEEEDEEEVEEDEDMAEAEALANARMDMIQNAGAQNFPDDD
EEPIENAVVLHEDKKYYPSAEEVYGAETETLVMEEDAQPLEVPIIAPVKQKKLEVLERAP
LPTYYSNEFLAGLMTNPELVRNVAIVGHLHHGKTLVMDMFVEQTHEVRHEWRDNERPMRF
TDTRLDEQERAISLKMVPMSLVMEGSSGKSYLLNLIDTPGHINFNDEVSAALRLADGMLL
VVDAAEGVMVVTEKAVKQAIMEGLPICLLISKVDRLITELKLPPADAYHKLRHTIEEVNA
LITTYSGGNEELLVSPTRGNVGFSSAQSGWSFTLQSFSKLYCEVYGVHMDAAEFARRLWG
DVYYHSDTRTFRKKAPERGGERSFVQFILEPLYKIYAQVLGEHDSGVKEMLGTFGVQLKP
SAFKKDVKPLLKEACTRIFGTATGLVDMMVKHVERTYTGPQTGDIVDHMKACNPRGPLVI
HIAKLFPKTDVSAFDALGRILSGTVKPGDRVRVLGEAYTPEDEEDSAVAEVTKVWVYQAR
YRIPLTKALAGNWVLLEGLDATITKTATIVPEYLDEDVHIFRPLQFQTQAVVKIAVEPLN
PSELPKMVEGLRKINKSYPLAVTKVEESGEHAILGTGEIYLDSLMKDLRELYAEVEVKVA
DPVVAFCETVVETSSLRCFAETPNKRNKLTMIAEPLEKGLAEDIESGAVDISWPRRRLGE
FFTTRYDWDVLAARSVWAFGPQRAGPNILMDDTLPTDVDKSLLSAVRDSVVQGFQWGTRE
GPLCDEPIRNVKFKILGAEIAPEPLARGGGQIIPTARRVCYSAFLMATPRLVEPVYYVEI
QTPADCITAIYAVLGKRRGHVTADVPKPGTPIFIVKAFLPVIESFGFETDLRYHTQGQAF
CLSVFDHWQIVPGDPLDRSVELRPLEPAPVNALARELMVKTRRRKGMSEDVSIHKFFDDP
MLIELARQDADLEKFV
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atggacgattctctgtacgatgagtttggaaactacatcggacctgagttgtcaggcagc
gaagaggaggatgaggaggaagtcgaggaggatgaggacatggcagaggcggaggccctg
gccaacgccaggatggacatgatccagaatgcgggggcacagaatttccctgatgacgat
gaggagcccatagagaatgcggtggtgctgcatgaggacaaaaagtactatccgtcagca
gaggaggtctatggggcagagacagagacactggtcatggaagaggatgcgcagcctctg
gaggttcccatcattgcaccagtaaagcagaagaagctggaggtgctagagcgtgccccg
ctgccaacttactacagcaatgagtttctggcggggctcatgaccaacccagagctggtc
aggaacgtggccattgtcggccacctgcaccacggcaaaacactggtcatggacatgttt
gtggagcagacgcatgaggtcaggcacgagtggagggacaatgagcggccgatgcgcttc
acagacacgcggctggacgagcaggagcgcgccattagcctcaagatggtgcccatgagc
ctcgtcatggagggctcctccggcaaatcttacctcctcaacctcattgacaccccaggc
cacatcaacttcaacgatgaagtcagcgctgcgctgaggctggcggatggcatgctgctg
gtggtggacgcagccgagggggtcatggtggtcaccgagaaggctgtcaagcaggccatc
atggagggcctgcccatctgcctccttatctccaaggtggacaggctcatcacagagctc
aagctgcctcctgcagatgcctaccacaaattgcggcataccattgaggaggtcaacgct
ttgatcaccacctactctggtggcaatgaggagctgctggtgagcccaacaaggggaaac
gtgggcttcagctcggcgcagtcgggctggtccttcacgctgcagtccttcagcaagctc
tactgcgaggtctatggagtccacatggacgcggctgagtttgcgcggcgcctctggggc
gacgtgtactaccactccgacacgcgcaccttccgcaagaaggccccggagcgcggcggc
gagcgcagctttgtgcaattcatcctggagcccctgtacaagatctacgcccaggtgctg
ggagagcatgattcgggcgtgaaggagatgctgggcacgtttggggtgcagctgaagccg
tcggcgttcaaaaaggacgtgaagccgctgctgaaggaggcgtgcacgcgcatcttcggc
acggccactggcctcgtggacatgatggtcaagcacgttgaacggacgtacacagggccg
cagacgggggacatcgtggaccacatgaaggcgtgcaatccacgggggccgctggtcatc
cacattgcaaagctgttccccaagacggacgtcagcgccttcgacgcgctcgggcgcatc
ctgtcggggacggtgaagccgggcgaccgcgtgcgcgtgctgggcgaggcatacaccccc
gaggacgaggaggacagcgccgtggccgaggtcaccaaggtctgggtgtaccaggcccgc
taccgcatccccctcaccaaggccctggcaggcaactgggtgctgctggaggggctggac
gccaccatcacaaagacggcgacgatcgtgccggaatacctggacgaggacgtgcacatc
ttccggccgctgcagttccagacgcaggcggtggtcaagatcgccgtggagccgctcaac
ccctctgagctgcccaagatggtggagggtctgcggaagatcaacaagagttatccgctg
gcggtgaccaaggtggaggagagcggcgagcacgccatcctgggcaccggggagatctac
ctcgactccctcatgaaggatttgagggagctgtatgcagaggtggaggtaaaggtggcg
gacccggtggtggccttctgcgagacggtggtggagacgtcctcgctgcggtgttttgcg
gagacgcccaacaagcgcaacaagctcaccatgatcgcagagccgctcgaaaaggggctg
gcggaggacatagagagtggtgcggtggacatatcgtggccgcggcggcgactgggtgag
ttcttcacgacgcggtacgactgggacgtcctggcggcgcgctcagtgtgggcctttggg
ccgcagcgcgccggccccaacatcctcatggacgacacgctgcccaccgacgtcgacaag
tccctcctctccgccgtccgcgactccgtcgtccagggcttccagtggggcacgcgggag
gggccgctgtgcgacgagccaatccgcaacgtcaagttcaagatcctgggggctgagatt
gcgccggagccgctggcgcgcggtggcggccagatcatccccacggcgcgccgcgtgtgc
tactccgcgttcctcatggccactccccgcctcgtggagcccgtgtactatgtcgagatc
cagacccctgcagattgcatcactgcgatctacgcggtgctgggcaagaggagagggcac
gtcaccgcagacgtgcccaagcccggcacgcccatcttcattgtcaaggccttcctgccc
gtcatcgagtcctttggctttgagacggacctgcgctaccacacccaggggcaggccttc
tgcctatccgtctttgaccactggcagattgtgccgggcgacccgctggaccggtcggtg
gagctgcggccgctggagccggcgccggtgaatgcgttggcgcgcgaactcatggtcaag
acgcgccggcgcaagggcatgagcgaggacgtctccatccacaagttcttcgacgacccc
atgctcatcgagctcgcgcgccaggacgccgacctcgagaagtttgtctga
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