Caminicella sporogenes: QNI18_07010
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Entry
QNI18_07010 CDS
T09087
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cspo
Caminicella sporogenes
Pathway
cspo03030
DNA replication
cspo03410
Base excision repair
cspo03420
Nucleotide excision repair
cspo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cspo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QNI18_07010 (ligA)
03410 Base excision repair
QNI18_07010 (ligA)
03420 Nucleotide excision repair
QNI18_07010 (ligA)
03430 Mismatch repair
QNI18_07010 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cspo03032
]
QNI18_07010 (ligA)
03400 DNA repair and recombination proteins [BR:
cspo03400
]
QNI18_07010 (ligA)
Enzymes [BR:
cspo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QNI18_07010 (ligA)
DNA replication proteins [BR:
cspo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QNI18_07010 (ligA)
DNA repair and recombination proteins [BR:
cspo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QNI18_07010 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QNI18_07010 (ligA)
MMR (mismatch excision repair)
DNA ligase
QNI18_07010 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QNI18_07010 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
RNA_ligase
HHH_8
GFRP
HHH_3
ILEI
zf-NADH-PPase
Lig_C
Motif
Other DBs
NCBI-ProteinID:
WIF94063
LinkDB
All DBs
Position
1447408..1449411
Genome browser
AA seq
667 aa
AA seq
DB search
MDKQKAQERIRELKEKINYHDYRYYVLDNPEITDYEYDMLMKELIELEEKFPEFIAQDSP
TQRVGGKPLVKFEQVAHIVPLLSLSNSYDENDLLDFDRRIRKEIGNKVEYVVEFKIDGLS
VALKYENGKFVRGATRGDGLIGEDVTNNLRTVKSIPLALLENIDIEVRGEVYISKKKFAD
LNKRQEESGQPVFANPRNAAAGSLRQLDPKVTASRPLDIFIFSILKIEGKDLNKHSEGLE
YLKKLGFKTSKYELCKNINEVIQLCKKWHEKRHELPFEIDGLVIKVNDLNKHEILGTTAK
SPRWAIAYKFPAEEKETVVKDIIVQVGRTGVITPTAVLEPVRIAGTVVSRATLHNQDFIN
EKDIRIGDKVIIHKAGDIIPEVVRVLKDKRTGNEVKFELPKECPACGEKTVRLEGEVAVR
CINMACPAQLRRKIIHFVSRDAMNIDGLGEAIITILLEKEFIKDPGDLYYLNDKKDELVK
LERMGEKSVSNLLNAIENSKNNDLSRLINALGIRLVGSKAAKVLAEEFKSIDSLINASIE
KLTAIDEIGPKMAESIVEFFRDEKNLEIIEKMKRAGVNMESKKKATEDGEIELKLKDKTF
VLTGTLNNYTRNEAKEIIERLGGKVTGSVSKKTSYVLVGENPGSKLDKANKLGVRVITEE
EFEEMIK
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggataaacaaaaagcccaagaaagaataagagaattaaaagaaaaaataaattatcat
gattatagatattatgttttagataatccagagattacagattatgaatatgatatgctc
atgaaggagcttatagaattagaagaaaaatttccagaatttatagctcaagattctcca
actcaaagagtaggaggaaagccacttgtaaagtttgaacaagttgctcatatagttccg
cttctcagtcttagcaattcgtatgatgaaaatgaccttttagattttgatagaagaata
aggaaagaaatagggaataaagtcgaatatgtagttgaatttaaaatagatggactgtct
gttgcattaaaatatgaaaatggaaaatttgtaaggggagctacaagaggagatggatta
ataggagaagatgtaacaaataatcttcgtacagtaaaatcaatacctcttgcattacta
gaaaatatagatatagaagttagaggagaagtttatatatctaagaaaaaatttgcagat
ttaaataaaagacaagaagagagcggacagccagtatttgcaaatccgaggaatgccgct
gcaggttcactaaggcagcttgaccctaaggttactgcctcaagaccattagatattttt
atatttagtattcttaaaatagaaggaaaagatttaaataaacattctgaaggattggaa
tatcttaaaaagttaggttttaaaacttcaaagtatgaattatgtaaaaatataaatgaa
gtcatacagctttgtaaaaagtggcatgaaaaaagacatgaactgccttttgaaatagat
ggtttggttataaaggtcaatgatttaaataagcatgaaatacttggaacaacagcaaaa
agtccaagatgggcgatagcttataaatttcctgcagaagaaaaagaaactgtagtaaag
gatattatagttcaagttggtcgaactggagtaataactcctactgcagtgcttgagcct
gttagaatagcaggtacagttgtaagtagagctacgctacataatcaggattttataaat
gaaaaggatataagaataggagataaagttataattcataaagcaggagatataattcct
gaggttgtacgagttttaaaggataagagaactggaaatgaggtaaaatttgagcttcca
aaagaatgtcctgcatgcggagaaaaaacagtcagacttgaaggtgaagtagcagttagg
tgtataaatatggcttgtcctgctcagcttagaagaaaaataattcattttgtttcaaga
gatgctatgaatatagacggtttaggagaagctataattactattcttttagagaaagaa
tttattaaagaccccggcgatttatattatttgaatgacaaaaaagatgaacttgtcaaa
ttagaaagaatgggagaaaaatcggtatccaatcttttgaatgcaatagaaaattctaaa
aataatgatttgagtaggcttataaatgctttaggtataagattagtaggttcaaaagct
gcgaaagttcttgcagaagaatttaaaagtatagatagtttaataaatgcaagtatagag
aaacttactgctatagatgaaataggtcctaaaatggctgaaagtatagtagaatttttt
agagatgaaaagaatttggagattatagagaagatgaaaagagctggagtcaatatggaa
agtaagaaaaaagctacagaagatggagaaatagaattaaaattaaaagataaaactttt
gtacttacaggaactttaaacaattatactagaaatgaagctaaggaaataattgaaaga
ttaggtggaaaagttacaggcagtgttagtaaaaaaacgagttatgttcttgtaggggaa
aatccgggttctaagctagataaggcaaataaattaggagtaagagttattacagaagaa
gaatttgaagaaatgattaaatag
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