Clostridium scatologenes: CSCA_4228
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Entry
CSCA_4228 CDS
T03803
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
csq
Clostridium scatologenes
Pathway
csq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CSCA_4228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csq03400
]
CSCA_4228
Enzymes [BR:
csq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CSCA_4228
DNA repair and recombination proteins [BR:
csq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CSCA_4228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
IstB_IS21
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AKA71353
UniProt:
A0A0E3M8B8
LinkDB
All DBs
Position
4558560..4562081
Genome browser
AA seq
1173 aa
AA seq
DB search
MRLEGLLKPLKNSREFKSIINSIEKSKFPVGIFGLSESARGYLIDGVYEELDKPFLVLTH
SDVEAKRLYEDLSLYLTNVYYFPTKEVVFYNIYAISGDLRWERLKVIREMLKSGKKIIVT
CIETLASSYIPVNLYRNYTFNISIKDILDIEDLKQKLIQCGYEKVEIIDGKGQFSIRGGI
MDIYSPTAAEPYRIELFGNEVDSIRSFNLQSQRSVEKVKNIEIFPAKEMILNNESIQKGL
QGMESDLKLVCDKLKKRKDNEALENIQQEVKKNLESLRENWTFETIDSFLPYFYDKTSSF
LDYTEEYFIILDDLQRCKGKLDSVYFEFEENYKSFLQRGNILSKQSELLLNKSHVFESLE
EKEVMTMDAIPKSTKILAPRSIVNFSQITLHNYHGQMELLIQDIKDKKGKGVKIVILSGT
RPRGERLVNTLRDNDIESSYKDVIHDIQPGEVIITFGSQLNGFEYPELKICVISDKEVFG
EAKRKSTSKASKKGINKIKSFAELKPGDYVVHANHGIGVYKGIKQLELQGHKKDYLELIY
ESDDKLYVPVEQLDMVQKYIGTEGKIPKINKLGSAEWAKAKKKVKKSIEEIAEDLVKLYA
VRSTLKGYKYSKDTVWQKQFEEEFPYEETPDQVTSIEDIKSDMESDKPMDRLLCGDVGYG
KTEVAVRAAFKAVMDGKQVAFLVPTTILAQQHYNNFVQRFSDFPVKIDMISRFRTTSQQK
SSIKALKAGEIDILIGTHRIIQKDVQFKDLGLLIVDEEQRFGVTHKEKIKKMKKNIDVLT
LSATPIPRTLHMSLVGVRDISVIETPPEERYPVQTYVVEYNDQLIRDAILRELNRGGQVY
FVYNRVENIKEMASYVAKLVPEARVAVAHGQMQERELENIIVDFMKNEYDILVATTIIET
GMDIQNVNTMIIYDSDKMGLSQLYQLRGRVGRTNRMAYCYLTYRKDKILTEVAEKRLKAI
KDFTELGSGFKIALKDLEIRGAGNMMGSSQHGHMAAVGYDLYCRMLEDTIKLVRGDIDKE
PVETTVELKVDAYIPTNYVKDEVQKIEIYKRIAAIDCYEDMEDIEGELKDRFSDIPPSIY
NLMNIAYIRSIGKKLGIQEIKEKKDEVVFKFDNKERMEENMLKGLIKDYNRKISIKLSDN
PGFGYKIKEVKKENLVYNIKEIMEYMANICHKK
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgagattagaaggacttttaaaacctcttaaaaatagtagggaatttaaaagtataatt
aatagtatagaaaaaagtaagtttcctgtaggtatatttggactttcagagtcggctagg
ggatatttaatagatggagtgtatgaggaactagacaagccttttttagtacttactcat
agtgatgtagaggcaaaaaggttgtatgaagatttatctttatatcttactaatgtttat
tattttcctacaaaagaagtggttttttataatatttatgcaatatcaggagatcttaga
tgggaaagactaaaagttattagagaaatgcttaagagtggtaaaaagattatagttaca
tgtatagagacgttagcttctagctatattcctgtaaacctttatagaaattataccttt
aatatttctataaaggatattttagatatagaggatttaaagcaaaagttaatacaatgt
ggatatgagaaagtagagattatagatggtaaaggtcagttttctataagaggagggata
atggatatatattctcccacagctgcagaaccatatagaatagaactttttggtaatgaa
gtagattctattagaagttttaatttacaatcacaaagaagtgtcgagaaggtaaagaat
atagaaatttttccagctaaagaaatgattttaaataatgaaagtatacaaaaaggtctt
cagggcatggaaagtgatttgaaacttgtatgtgataaactaaaaaagagaaaagataat
gaagcattagagaatattcagcaagaagttaaaaaaaatttagaatcattaagagaaaac
tggacttttgaaactatagatagttttttaccatatttttatgataagacttcttctttt
ttagattatacagaagagtattttataattttagatgatttacaaagatgtaagggaaaa
ttagatagtgtttactttgaatttgaagaaaattataaaagctttttacaaagaggtaat
attttatcaaagcaaagtgagttattattgaataaatctcatgtgtttgaatctttagaa
gaaaaagaagttatgaccatggatgctatacctaagtctacaaagatactagcaccaaga
tctatagttaatttttctcaaataacattgcataattatcatggacaaatggagttgctt
atacaggatataaaggataaaaaaggcaaaggagttaaaatagttattctttcaggaact
agaccaagaggagaaagattagtaaatactttacgagataatgatatagaaagttcgtat
aaagatgtaatacatgatattcagccaggagaagtaataataacatttggaagtcagctg
aatggttttgaatatccagagttaaaaatatgtgttatttcagataaagaggtttttgga
gaggcaaaaagaaaatctaccagcaaggcatctaaaaaaggaataaacaagattaaaagt
tttgcagagcttaagcctggtgactatgtagttcatgcaaatcacggaataggagtatat
aagggaataaaacaactagagcttcaaggacataaaaaagattatcttgagttaatttat
gaatctgatgataaattatatgttcctgtagaacaactggacatggttcaaaagtacata
ggcactgaaggaaaaatacctaagataaataaattaggaagtgcagaatgggcaaaagca
aaaaagaaggttaaaaagtctatagaagaaatagctgaagatttagtaaagctttatgct
gttagatcaacattaaagggatataaatattcaaaggatactgtttggcaaaagcaattt
gaagaagaatttccttatgaagaaactccagatcaagttacatcaatagaagacataaaa
tcagatatggagtcagataaacctatggacagactattatgtggtgatgtagggtatgga
aaaacagaagttgctgtaagagcagcttttaaggcagtaatggacggaaagcaagtagca
tttttagttccaactacaatacttgcacagcagcactataataattttgtacaaagattt
tctgattttcctgtcaagatagatatgataagtagatttagaacgacatcacagcaaaaa
tctagtattaaggctttaaaagcaggggaaatagatatacttataggaacacatagaatt
attcaaaaagatgttcaatttaaggatctagggcttttaatagtagatgaagagcaaaga
tttggagttacacataaagaaaaaataaaaaagatgaaaaaaaatatagatgtattaact
ttaagtgctacacctatacctagaacattacacatgtctctagtaggtgtaagagatata
agtgtaattgaaacgcctccagaagaaagatacccagtacaaacttatgtagtagaatat
aatgatcagttaataagagacgctatattaagagagttaaataggggaggacaggtttac
ttcgtatataatagagttgaaaatattaaagaaatggcttcttatgtggctaaactagtt
ccagaagcgagagtagctgttgcacatggtcagatgcaagaaagggagctagaaaatatt
atagttgatttcatgaagaatgagtatgatattttggtagctactacaataatagagaca
ggaatggatattcaaaatgtaaatactatgataatatatgattcagataaaatggggtta
tctcaattgtatcagctaagaggaagggttggaagaactaataggatggcttactgttac
cttacatacagaaaagataaaatcttaacagaagtagctgaaaaaagacttaaggctata
aaggattttacagaattaggatcaggatttaaaatagcattaaaggatcttgaaataaga
ggagcaggaaatatgatggggtcgtctcaacatgggcatatggcggctgtaggatatgac
ttatattgtaggatgctagaggatactataaagcttgtaagaggagatatagataaagaa
ccagtagaaacaactgtagaattaaaggtagatgcatatattccaacgaactatgtgaaa
gatgaagtacaaaaaatagagatatacaaaagaattgcagctattgattgttatgaagat
atggaagatattgagggagaattgaaggatagattttcggatattccaccttctatatat
aatcttatgaatatagcctatataagaagcataggaaagaaattaggaattcaagagatc
aaggaaaagaaggatgaagttgtattcaagttcgataataaagaaagaatggaggaaaat
atgcttaaagggcttataaaggattataacagaaaaataagtataaaattatcagataac
cctggatttggatataagattaaggaggtaaagaaagaaaatttagtttataatataaaa
gaaattatggagtatatggctaatatatgtcataaaaaataa
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