Thermoclostridium stercorarium subsp. stercorarium DSM 8532: Cst_c16030
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Entry
Cst_c16030 CDS
T02440
Symbol
ligD1
Name
(GenBank) DNA polymerase LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
css
Thermoclostridium stercorarium subsp. stercorarium DSM 8532
Pathway
css03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
css00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Cst_c16030 (ligD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
css03400
]
Cst_c16030 (ligD1)
Enzymes [BR:
css01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Cst_c16030 (ligD1)
DNA repair and recombination proteins [BR:
css03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Cst_c16030 (ligD1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Glyco_hydro_129
Motif
Other DBs
NCBI-ProteinID:
AGC68589
UniProt:
L7VPJ2
LinkDB
All DBs
Position
complement(1732357..1732863)
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AA seq
168 aa
AA seq
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MDPSEGQSFAQVTDAAMIIYNTLEELGIRSYCKTSGATGLQIAVPLAGEIDYDTARKVNE
FFGRYFAQKYPDVFTIERKINDRGKKIYFDYLQMWKGKTIICPYSPRATKTANVSAPVLW
EEVEKGIVPEDFTLKNIIQRLEEKGDLYESVYTSGLDAGIKNLMAEIM
NT seq
507 nt
NT seq
+upstream
nt +downstream
nt
ttggatccgtcggaaggtcagtcttttgcccaggtaaccgacgctgcaatgataatttac
aataccctggaagagctgggaattagaagctactgcaagacttcaggggcgactgggctg
caaatagcggtaccgttggccggtgagattgattacgataccgcaagaaaggtaaatgag
tttttcggacggtattttgcacagaaatatcctgatgtttttacaatagagcgtaaaata
aacgacagaggcaaaaaaatatattttgactacctgcagatgtggaagggtaaaacgatt
atctgcccgtattcgccgagagctacgaaaactgcgaatgtctcggctcctgttttatgg
gaagaggtggaaaaaggaattgtacctgaggattttacgttaaaaaacataatacaaagg
cttgaggaaaaaggtgatttgtatgaaagtgtatatacctcagggcttgatgcaggaatt
aaaaatttaatggcagaaataatgtga
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