Colius striatus (speckled mousebird): 104556856
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Entry
104556856 CDS
T08355
Symbol
SCAF8
Name
(RefSeq) LOW QUALITY PROTEIN: protein SCAF8
KO
K13191
RNA-binding protein 16
Organism
csti
Colius striatus (speckled mousebird)
Brite
KEGG Orthology (KO) [BR:
csti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csti03021
]
104556856 (SCAF8)
03041 Spliceosome [BR:
csti03041
]
104556856 (SCAF8)
Transcription machinery [BR:
csti03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104556856 (SCAF8)
Spliceosome [BR:
csti03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
104556856 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
104556856
NCBI-ProteinID:
XP_010199176
LinkDB
All DBs
Position
Unknown
AA seq
1334 aa
AA seq
DB search
MTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFA
PRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAGGIPPPVVTP
VLPGTTAAMSNNTPGTPVTPVTPANVVQSLPDPWVSQIANTDTLAAVAQILQSPQGQQLQ
QLIQTLQIQQQKPQPSLLQALDAGLVVQLQALTAQLTAAAAAANTLNPLEQSVSFNKKLM
DRFEFGEESEQNEEPKKETPTSQLPLVPESVNNSLFHQLAEQLQQQNLEHLRQQLLEQQQ
PQKASPEENQEGNFGSEHSASPSQGSSQQQFLEVEANVDDSMDIQQQDMDIDEGQDVAEE
EIFEQEEKKSAVRSRSRTRSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSR
SYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIE
SINMIPPRGCAYVCMVHRQDAYRALQKLSSGSYKIGSKIIKIAWALNKGVKTEYKQFWDV
DLGVSYIPWEKVKLDDLEGFAEGGMIDQETVNTEWETARSSEAAKESTQTTQSAAVDKST
VITTQTEAYTQPVTMLQIPVAPAVPAVSLVPPAFPVTMSVPPPGYSAIPPPPFLRASFNP
SQPPPGYMPPPVPPVVPPPVVPPPVVPPVVPTPLVQPPLPIAQETMKDVPFTSLVLPVGT
VASNLVTPTLSAGSVFNPLPISKPESDEKGSHLADLQISSSENNRSVQNDVSSSSGLVGG
VQPPNVSSSSGLTGEGQPPSVSSNSGLAGGVQPPNVSSSSGLVGGVQPPTVSSSSGLAGG
VQLPTVSSNTSLAGGVQPASVSSSSGLIAGVQPPNVSSSSGLLAGVHPPSVSSSPGLLTG
MQPPIVSSSSGVLSGVQPPSVSSNSGLLIMPPPNVSNNSGLMGVPPPNISSSSGLLAMQH
PAGVQNMPHLNINSQRMPGMPLIDIRPGLIPHSPGPRFPLMQPGTPPQRSIPPPTILDPS
LHPPPRGPFPPGDIFNQTERPFGTPGRQNIDSISNPEKRLQLGGDNIQQFFEGDRDYRFP
PVENRDNLNRPPSVDVRDSVGRPPVDPREGIGRSPVDGREHFARPHVDMRENFGRPGIDN
LGRREHFGFNSDKHWGQRGDYDEREHHPFPIYSGPKGFQEDRERFRHVNYRFDSRSGPNW
NRGFEQDTHRDFDDRRRPWERQRDRDDRDFNFCREINGNRFGRDRMSNNWIPPPHPRVFE
YFDGATSQRKADNMPQVNGENAETEGQPPTAQVQDDPELYEKLTSSVEINKEKSDTEADI
ESEPVVESTETEGT
NT seq
4005 nt
NT seq
+upstream
nt +downstream
nt
atgacacagatcaccaaggcagcaatcaaggctataaagttctacaagcacgttgtacag
agtgttgagaaattcattcaaaagtgcaaaccggaatacaaggtacccgggctgtatgtc
attgactccattgtaagacagtcccgacatcagtttgggcaagaaaaggatgtgtttgct
ccaagattcagcaataacatcatcagcactttccagaacttgtaccgttgtcctggagat
gacaagagtaaaattgttagagtgctaaatttatggcagaagaataatgtattcaagagt
gaaattattcagcctctcctggatatggcaggtggaattcctcctccagttgtgacccct
gtcttgcccggcactacagctgctatgagcaacaatacaccaggaacacctgtgactcca
gttactccagccaatgtggtgcagagtttacctgatccttgggtatctcagattgctaat
acagatacccttgctgctgttgcccagattttacagagtcctcaaggccaacagcttcag
cagttgatacagacactgcagatacagcagcagaaacctcagccttcacttcttcaagcc
ctggatgctggtcttgtcgttcagttacaggccctcacagcacaacttacagctgcagct
gctgctgctaacacacttaatccactggaacagagtgtctcttttaataagaagctgatg
gacagatttgaatttggtgaagagtctgaacaaaatgaagagcctaaaaaggaaactccc
acttctcaactgcctttagtaccagaatctgtgaacaactcactttttcatcaactagct
gaacagctacagcaacaaaatttagaacatctcagacaacagcttctggagcaacagcag
cctcaaaaagcaagccctgaggagaatcaagaaggaaattttggttcagaacactctgcc
tcaccatcacaagggagtagtcagcagcagtttttagaagtggaagcaaatgtagatgat
tcaatggatattcaacagcaggacatggatatagatgaaggacaggatgttgccgaagag
gagatttttgaacaagaagaaaagaaatcagctgttcgttcaagatcaagaactcgttca
agatctcgttcaaggtcaccaagaaaacgaaggtctagatcacggtctggttctcgtaag
cgtaaacacagaaaacgttcacgctcaagatcgagagaaaggaagagaaagtcgtctcgg
tcatattccagtgaaagaagggctagggaaagggaaaaagaacgtcagaaaaagggatta
cctcctatacggtcaaaaacactaagtgtttgcagtactactctttgggtaggtcaagta
gacaagaaggctacgcagcaagatttaactaacttgtttgaagaatttggacaaatagag
tcaattaatatgattcccccaagaggttgtgcttacgtctgtatggttcatagacaagat
gcgtatcgtgctcttcagaaacttagttctgggtcctataagattggatctaaaattatt
aagattgcctgggctttgaataaaggtgtgaaaacagaatacaagcaattctgggatgtg
gatctgggagtttcatatattccttgggagaaagtaaaattggatgatttagagggcttt
gctgaaggtggcatgattgatcaggaaacagtaaatacagaatgggaaacagccagaagc
tctgaagctgctaaagagagtactcaaactacacagagtgcagcagttgataagagtact
gttattacaacacagacagaagcttacacgcaaccagtcactatgctgcagattccagta
gctccagctgtgcctgctgttagcttggttccacctgcatttcctgtcacaatgtctgtc
cctcctcctggttatagtgcaattcctcctccacccttcttgcgagcaagtttcaaccct
tcacagccacctccaggttatatgcctcccccagttccacctgtggtcccgccacctgtg
gtcccaccacctgttgtcccaccagttgttccaacacctttagtacagcctccattacca
attgcacaagagacgatgaaggatgttccttttactagccttgttctaccagttggcaca
gtggctagcaatctagttactccaacgttatctgctggaagtgtttttaatcctctgcca
atcagcaaaccagaatcagatgaaaagggatcacatcttgcagaccttcagatttcttcc
agtgaaaacaatagatctgtgcaaaatgatgtctcaagcagctctggacttgttggagga
gttcaaccgcccaatgtctcaagcagttctggacttactggagaagggcaaccacctagt
gtctcaagtaactctggacttgcagggggagtacagccacccaatgtttcaagcagctct
ggacttgtaggaggagtgcaaccgccaactgtttcaagcagttctggtcttgcaggagga
gtacagctgcctactgtctccagtaacacttctcttgctggtggagttcagccagccagt
gtctcaagtagttctggacttattgctggagtgcaaccaccaaatgtctcaagtagctca
ggacttctagctggagtgcatccaccaagtgtctcaagcagccctggccttttgacggga
atgcagccacccattgtctcaagcagctcaggagttctgtcaggagtacagccacctagt
gtctcaagcaactctgggcttcttataatgccacctcccaatgtttcaaataattctgga
cttatgggagtgccaccaccaaatatttcaagtagttctggacttctggcaatgcagcat
ccagctggggttcaaaacatgcctcatttgaatattaatagtcaaaggatgccagggatg
cctctcatagatatccgtccaggtctaatacctcattcacctggaccaaggtttccatta
atgcaaccaggaacgccaccacagcgtagtattcctcctccaaccatcctcgatccatct
ctgcacccaccgcctcgaggcccttttcctccaggagatatttttaatcaaacagaaaga
ccatttggaacaccaggaagacagaatatcgatagcatttctaacccggagaaaagacta
caacttggaggtgataatattcagcagttttttgaaggagacagagattatcgctttcct
ccagtggaaaatagagataatcttaacagaccaccttcagtggatgtcagagattctgtt
ggacgacccccagttgatccaagagagggtataggaaggtctccagtagacggaagagaa
cattttgcaagaccacatgtagacatgagagaaaattttggaagaccaggtatagataac
cttggtcgaagagagcattttggtttcaattcagacaagcactggggacagagaggggat
tatgatgaaagagagcatcatcccttccctatttacagtggccctaaaggcttccaggaa
gacagagagaggtttcggcatgtaaactataggtttgatagcagaagtggtcccaattgg
aacagaggatttgaacaagatactcacagagattttgatgaccgcagaagaccttgggaa
agacagagggatagggatgacagagattttaacttttgcagagaaattaacgggaacagg
tttgggagagacagaatgtcaaacaactggatcccccctccacatccacgggtttttgaa
tattttgatggggccacttcccaacgcaaagctgataatatgccccaggtaaacggtgaa
aatgcagagacagaaggtcagccaccaactgcacaagtgcaggacgatccagaactttat
gaaaaactgacatcttccgtcgagataaacaaagagaagagtgacacagaagctgatata
gaaagtgaaccagtggtagaaagcacagaaactgaggggacataa
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