Yamadazyma tenuis: CANTEDRAFT_110030
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Entry
CANTEDRAFT_110030 CDS
T03099
Name
(RefSeq) dead Box protein Dhh1p
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cten
Yamadazyma tenuis
Pathway
cten03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cten00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CANTEDRAFT_110030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cten03019
]
CANTEDRAFT_110030
03036 Chromosome and associated proteins [BR:
cten03036
]
CANTEDRAFT_110030
Enzymes [BR:
cten01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CANTEDRAFT_110030
Messenger RNA biogenesis [BR:
cten03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
CANTEDRAFT_110030
mRNA degradation factors
5'-3' decay
Decapping complex
CANTEDRAFT_110030
Chromosome and associated proteins [BR:
cten03036
]
Eukaryotic type
Gene silencing
piRNA pathway
CANTEDRAFT_110030
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
XYPPX
Motif
Other DBs
NCBI-GeneID:
18246166
NCBI-ProteinID:
XP_006689634
JGI:
Cante1_110030
UniProt:
G3BE00
LinkDB
All DBs
Position
Unknown
AA seq
501 aa
AA seq
DB search
MSETDWKSSLNLPEKDTRPQTEDVLNTKGKSFEDLGLKRELLMGIFEAGFEKPSPIQEES
IPIALTGRDILARAKNGTGKTASFVIPTLQMIKPKVNKIQGLILVPTRELALQTSQVVRT
LGKHLGIQCMVSTGGTPVKDDILRLNDPVHVLVGTPGRILDLASRNIADMSECSLFVMDE
ADKMLSREFKRTIERILELFPSNRQSLLFSATFPLAVKSFMEEHLNKPYEINLMDELTLK
GISQFYAFVDEKQKLHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYSHAR
MPQQARNKVFHEFRMGKVRNLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGR
FGHLGLAVNLLSWDDRYNLYKIEQELGTEIKPIPSVIDKSLYVAENESSVPKPFSTAQNG
APPQGYPPQAYPPQGYPPQGYPQGYPPQGYPPQGYAPHGVAPQVNGYPQYPQYGYPPYNG
QYQQPMAQPQPSTQSSPTAKQ
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaactgattggaaaagttcgttaaatcttcctgaaaaggatacaagaccccaa
acagaggatgtgttaaacacaaagggcaagagttttgaagatctcgggttaaagagagaa
cttttgatgggaatttttgaagctggtttcgaaaagccttctccaatccaagaagagtca
attccaatagctttaaccggtagagatattttagcaagagctaaaaatggtactggtaag
actgcttcgtttgttattcctaccttacaaatgatcaagccaaaggtaaacaaaattcag
gggttaatcttagttccaactagagaattggccttgcaaacttctcaagtggtgagaact
ttaggtaagcacttaggaatccaatgtatggtatcaaccggtggtacccctgtcaaggat
gacattttaagattgaatgatcctgttcatgttttagtgggtactccgggtagaatttta
gacttggcttctagaaacattgctgatatgtctgagtgttctcttttcgtgatggacgaa
gcagacaaaatgttatctagagagttcaaaaggactattgaaagaattttagagcttttc
ccaagcaacagacaatcattattgtttagtgctactttcccattggctgtcaagtcgttc
atggaagaacacttgaacaagccatatgaaatcaatttaatggatgaattaactttgaaa
ggtatttctcaattctatgcctttgttgatgaaaagcaaaagttgcactgcttgaacacc
ttgttcagtaagttacaaatcaaccaatctattatcttttgtaactctaccaatagagtg
gaattattagccaagaaaatcactgaattaggatactcttgttactattctcatgctaga
atgcctcaacaagccagaaacaaagttttccatgaattcagaatgggaaaagttagaaac
ttggtatgttctgatttgttgacaagaggtattgatattcaagctgttaatgttgttatt
aatttcgacttcccaaaaactgccgaaacttatttgcacagaatcggtagatccggtaga
tttggtcacttgggtttagctgtgaacttgttgagttgggatgatcgttacaacttatac
aaaattgagcaagaattaggaaccgaaatcaaaccaatccctagtgtgattgacaaatct
ttatatgtggctgaaaatgaatcatccgtccctaagcctttctccactgcacaaaatggt
gctccacctcaaggttatcccccgcaggcctacccacctcaaggctacccacctcaaggt
tatcctcagggttatccgccccaaggatatcctcctcagggttacgcccctcatggagtt
gctcctcaagttaatgggtaccctcagtatcctcaatatggatatccaccctacaacggc
caataccagcaaccaatggcacaacctcaaccctcgactcaatcatcccccactgccaaa
caatga
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