Clostridium tetani 12124569: BN906_01387
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Entry
BN906_01387 CDS
T02905
Name
(GenBank) phosphodiesterase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
ctet
Clostridium tetani 12124569
Pathway
ctet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN906_01387
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctet03019
]
BN906_01387
Messenger RNA biogenesis [BR:
ctet03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BN906_01387
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
OmpH
TBD
KH_2
Motif
Other DBs
NCBI-ProteinID:
CDI49388
LinkDB
All DBs
Position
1361855..1363396
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AA seq
513 aa
AA seq
DB search
MNLTYYIVATIIIAVIAVYVDYYIRKNVSAAKISNAEDKGRNIIEDAKREAESKKKEAIL
EAKEEMHRLRNDFEKESKDRRNEIQRLERRIIQREEALDKKGDMLEKKEESLNKKYQELE
NKKSNIENLYEKQREELERLAGLTSDQAKEMLLEEVRKEIKHETAMLIKEVETKAKEEAD
KKAREITTYAIQRCAADHVAETTVYVVNLPNDEMKGRIIGREGRNIRTLETLTGVDLIID
DTPEAVILSAFDPVRREVARIALEKLIMDGRIHPARIEEMVEKAKKEVENNIREEGEQAT
FETSVHGLHSELIKLLGRLKYRTSYGQNVLKHSIEVSYLAGLMASELGMDPTLAKRAGLL
HDIGKAVDHEVEGPHAVIGAEVAKRYHESSIVVNAIAAHHGDEEFESIEAILVQAADAIS
AARPGARRETLEAYIKRLEKLEEIANSYEGVEKSYAIQAGRELRIIVKPEVVDDAGSYEM
ARNMAKTIENELEYPGQIKVNVIRETRSIEYAK
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
ttgaacttaacgtattatatagtggcaactattataatagcagttatagctgtatatgtt
gattactatattaggaaaaatgtatctgcagctaaaatttcaaatgcagaagataaggga
cgtaatataatagaagatgcgaaaagagaggctgaatctaaaaagaaagaagccatacta
gaagcaaaagaagaaatgcatagacttagaaacgattttgaaaaagagtctaaagacaga
agaaatgaaattcaaagattagaaagaagaataatacaaagagaagaagcacttgacaaa
aaaggtgacatgttagaaaagaaagaagaaagtttgaataaaaagtaccaagaattagaa
aataagaagagtaacatagaaaatttatacgaaaaacaaagagaagaattggaaaggctt
gctggattaacttcagatcaagctaaagaaatgttactagaagaagtaagaaaagaaatt
aaacatgaaaccgcaatgttaattaaagaggtagaaacaaaagctaaagaagaggccgat
aaaaaggcaagagaaataactacatatgctattcaaagatgtgcagcagaccatgttgca
gaaaccacagtttatgtagtaaatcttcctaatgatgaaatgaagggaagaattatagga
agagaaggtagaaatataagaacacttgaaactttaacaggtgtggatttaataatagat
gatacacctgaagcagttattctttcagcttttgaccctgtaagaagagaagttgctaga
atagctttagaaaaattaattatggatggacgtattcatccagctagaattgaagaaatg
gtagaaaaagctaaaaaagaagttgaaaataatattagagaagaaggagaacaggctaca
tttgaaacaagtgtgcatggacttcattcagaactaataaaattattaggtagattaaaa
tatagaactagttatggtcaaaatgttttaaaacattctatagaagtatcttacttagca
ggcttaatggcttcggaattgggaatggatcctactttagctaaaagagcaggattgctt
cacgatataggaaaggctgttgaccatgaagtggaaggcccacatgctgttataggagcc
gaagtggctaaaagatatcatgagtcatccatagttgtaaatgcaatagctgcccatcat
ggagatgaagaatttgaatctatagaagcaatattagttcaggcggcagatgctatttca
gctgctagacctggagcaagaagagaaactttagaagcttatattaaaaggttagaaaaa
cttgaagagattgcaaattcatatgaaggcgtagaaaagtcatatgccattcaagcgggt
agagagctaagaataatagttaaaccagaagtagtagatgacgcagggtcctatgagatg
gctagaaatatggctaaaaccatagagaatgaattagaataccctggtcaaattaaggta
aatgtaataagggaaactcgatccatcgagtatgctaaataa
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