Caldimicrobium thiodismutans: THC_0407
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Entry
THC_0407 CDS
T04224
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cthi
Caldimicrobium thiodismutans
Pathway
cthi03420
Nucleotide excision repair
cthi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cthi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
THC_0407
03430 Mismatch repair
THC_0407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cthi03400
]
THC_0407
Enzymes [BR:
cthi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
THC_0407
DNA repair and recombination proteins [BR:
cthi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
THC_0407
MMR (mismatch excision repair)
Other MMR factors
THC_0407
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
DEAD
AAA_12
DUF3553
AAA_11
CarD_TRCF_RID
PcrA_UvrD_tudor
HHH_5
PDZ_1
Ribosomal_S13_N
Motif
Other DBs
NCBI-ProteinID:
BAU22803
UniProt:
A0A0U5AFL7
LinkDB
All DBs
Position
complement(407932..410085)
Genome browser
AA seq
717 aa
AA seq
DB search
MRESKNYLQDLNPAQREAVETLYGPLLVIAGAGSGKTKTLVCRMAHLVEKGIPPEKILLL
TFTRRAAKEMIERASLLLKRDFHKVTGGTFHSLCHTMLRQYGTLIGYSPNFTLLDRTDAE
DLFNLLKTSLGLSDNKKRFPKKDTLANLYSKTLNQEKSLEELLDSEYPQFLEFLPEIQRL
FVEYKIYKKEHQLMDYDDLLLNWLEILKNYPQIRDEMGKRFHFIMVDEYQDTNTLQGEII
KYMASTHQNVMVVGDDSQSIYRFRGANYRNIFDFPKIFPQTKIIKLEQNYRSTQPILDLA
NVIIANSKIKYTKTLFTLKKEGAKPVLFRAKDEAETSKFVVDKILELREKGIKLSQIAVL
FRSAYHSYELEVELAKRGIPFVKYGGLKLLESAHIKDLLAFLKIILNPRDFLSWNRVLLL
MEGIGPRTAEKIIQTLKREALPTSLNRILGLSPSHELKRWLELYTTIKPYEEESPSEILQ
KIWYFYEPLFQRIYSEDYHRRVKDLEGLFSLVLKYKSLDEFVSDLLLEPLEITELEGETL
DEDPLILSTIHSAKGLEWHTVFILSLIEGRFPSLYSLKNTDDLEEERRLFYVAVTRAREK
LFLLSPLMVYLPGEGKTFAKPSRFLTELPKTLYEEVNYTTPEEKSSHIKPVTENYMNTHY
STELSSTSSFKIGDFVKHPHFGEGEVLEVMGEKIKVNFISKGPTILHLKYTQLERLL
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgagggaatccaagaattatcttcaagatttaaatccagcccagagagaagctgtagag
accctttatggacccctccttgtcattgcaggagctggctcagggaagacgaaaaccctg
gtttgccgaatggctcatttagttgaaaaaggaatccctccggaaaaaattcttcttctt
acctttacccgaagagcagccaaagaaatgattgaaagggcaagcctccttttaaaaagg
gactttcataaagttacaggtgggacctttcactccctctgccataccatgctcagacaa
tatggaactctgataggttacagcccaaactttactctcttagatagaaccgatgccgaa
gacctctttaatcttcttaaaacaagccttggcttaagtgataataaaaaaaggtttcct
aaaaaggataccttagcaaacttatacagcaagacccttaatcaggaaaaatccctggaa
gaacttcttgactcggaatatccacaattcttagagttcttacctgagattcaaaggctt
tttgtagaatacaagatttacaaaaaagaacaccaacttatggattacgacgatttactg
cttaattggcttgagatattaaaaaattatcctcaaatcagagatgagatgggaaaaaga
tttcatttcattatggtggatgagtatcaggacactaataccctacaaggcgagattata
aaatatatggcctctacccatcaaaatgttatggttgtaggggatgattcacaaagtatc
tatcggttcagaggagctaattatcggaatatttttgatttccctaaaattttcccccaa
accaaaattatcaagcttgaacaaaattatagaagcacccaacctattcttgatcttgca
aatgtcattattgctaattctaaaataaaatataccaaaaccctctttacccttaaaaaa
gagggagcaaaacctgtgcttttcagagccaaggatgaagcagaaacaagcaaatttgtg
gttgataagattttagaactgagagaaaagggaattaaactctctcaaatagcggtttta
tttcgctcagcctatcactcttacgaacttgaggtggaacttgctaaacggggcataccc
tttgttaaatatggaggcttaaaacttcttgagtctgctcatataaaggatctccttgcc
tttttaaaaattatattaaatcctcgggattttctttcctggaaccgggtgcttcttctt
atggagggaattggccctcgcactgcagaaaaaattattcagaccctgaaaagagaagct
ttacccacctcattaaatcgaattctgggacttagcccttctcacgagctcaaaagatgg
cttgaattatatactaccataaagccctatgaagaagaaagcccctccgagattttgcaa
aaaatctggtatttttatgaacccctatttcaacgcatctattctgaggactatcataga
agagtaaaagatttagaggggctcttttccttagtccttaaatacaaaagccttgatgag
tttgtatctgatctccttcttgaaccccttgaaattactgaattagagggtgagacctta
gatgaggatccccttattttatctaccattcattctgccaaaggcttggaatggcataca
gtctttatcctctctttaattgaaggtagatttccctcgctatatagtctaaaaaatacc
gatgaccttgaagaggaaagaaggctcttctatgttgcggtaaccagagccagagaaaaa
ctctttcttctctccccccttatggtttatttgcccggagaagggaaaacctttgctaaa
ccctccagatttttaaccgagcttccaaagaccctatatgaggaggtcaattatactacc
cctgaggaaaaaagctcccatatcaaacctgttacagaaaactatatgaatactcattat
tcaactgagctttcctcaacaagctcttttaaaatcggagactttgttaaacaccctcat
tttggagaaggagaggttcttgaagtaatgggagaaaaaattaaggtcaattttatcagt
aaagggccaactattttgcatcttaaatatactcaacttgagaggcttctatga
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