KEGG   Cupriavidus taiwanensis: pRALTA_0093
Entry
pRALTA_0093       CDS       T00702                                 
Name
(GenBank) ATP dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
cti  Cupriavidus taiwanensis
Pathway
cti03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cti00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    pRALTA_0093
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cti03400]
    pRALTA_0093
Enzymes [BR:cti01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     pRALTA_0093
DNA repair and recombination proteins [BR:cti03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     pRALTA_0093
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: CAP63791
UniProt: B2AJW4
LinkDB
Position
pRALTA:complement(88395..90932)
AA seq 845 aa
MATTHARRRTKRGETEPSPPLERYEKKRDFSITPEPAGRKARRKKPARLSFVIQKHWARR
LHYDFRLELDGVLLSWAVPKGPSYDPAEKRIAIHVEDHPLDYAAFEGEIPPKQYGAGSVI
VWDRGTWVPVGDPREGMAAGKLLFDLHGEKLAGRWELVRIAKPGDKSEQWILFKKRDAWA
RTLSEFDVLTALPDSVIAKPLGALNAEDGDKESVAVLDEDPATAVKRAPRAPLPAKLAPQ
LATLSPTLPAGTGWIIENKFDGYRILARISDAGVTLFTRNGHDWTRKLASLAAEIEKLDI
SEGWLDGEIVVLRDGVPDFNALQNAIDGHRNDAIVYFAFDLPYLEGRDLRSLPLVQRRAQ
LAALVAERTERVRFSEAFDAPATQMFQAACQLGLEGLMFKRADSPYVSARTQSWLKAKCK
LRQEFVIGGYSDREGSRTEVGRLYLGVYADGELRYTGGVGTGWDSAAATDLRKRLVKLQV
DKSPFSTEARASRRWGGRRATAVQWVKPTLVAEVEFSEWTPEGHVRHASFKGLRTDHAAK
SIRREAVQTAVTPHGMAAIKVTNPERVIDKTEGITKVELVRYYESIAMLMLPHLKDRPLS
LVRAPEGIDAPTFFQKHAETAMPGLTERPASLWPGHAALLTADSAEAIVAAAQMNVVEFH
TWNSTARDIDHPDRVIFDLDPGAGVAWETMLEAAMLVHALLDELGLQSWLKTSGGKGLHV
VVPLAPQHSYDEVKAFSRAAVQHLAATLPQRFTARSGATNRKGKIFVDYLRNGFSQTTAA
AFSARARPGLGVSMPVSWEQLPKLKSGGQWTIRDAREYLSFQVADPWSSYWETPQMLTDA
IERLS
NT seq 2538 nt   +upstreamnt  +downstreamnt
atggccacaacccacgcgaggcgcagaaccaagcgcggcgagacggagccatcgccgccg
cttgagcgctatgagaagaagcgcgatttcagcatcacccctgagccagcgggacggaaa
gcgcggcgaaagaagccagcacgcttgagcttcgtcatccagaagcattgggctcgccga
ctgcactacgactttcggttggagctcgatggcgtgctgctcagctgggccgtgccaaag
ggaccgagctacgatcctgcggaaaaacgtatcgccatccatgtcgaagaccacccgctc
gactatgccgcattcgaaggcgaaatcccgcccaagcaatacggcgccggatcggtgatt
gtttgggaccgcggcacctgggtaccggtcggcgatccccgcgaaggcatggccgcgggc
aagctactcttcgatctccacggcgaaaagcttgccggccgctgggaactggtgcgcatc
gccaagcccggcgacaaatccgagcagtggatcctgttcaagaaacgcgacgcgtgggcg
cgcacgttgtcggaattcgatgtgctgacggcgctgccggacagcgtcatcgccaagccc
ttgggcgcgctcaatgcagaggatggcgacaaggaatctgtcgcggtcctcgacgaggat
cccgccaccgccgtcaagcgcgcgccccgtgccccgctgcccgcaaagctcgccccgcaa
ctggccacgctgtcgccaacacttcccgccggcaccggctggatcatcgagaacaagttc
gacggctaccggatcctggccaggatctccgacgccggggtcacgctctttacccgaaat
gggcatgactggacccggaagctggcttcgctggcggcggagatcgagaagctggacatc
tcggaaggctggctggacggcgagattgtcgtgctgcgcgacggcgtgccggatttcaac
gccttgcagaatgccattgacggccatcgcaatgacgccatcgtctacttcgccttcgac
ctgccctacttggaaggccgcgatctgcgcagcttgccgctggtgcagcgccgggcccaa
ctggccgcgctggtcgcggagcgcacggagcgcgttcgcttcagcgaagccttcgacgcg
ccggcgacccagatgtttcaggcggcgtgccagctcggcctggaaggcttgatgttcaag
cgcgcagattcgccctatgtctcggcacgtacgcagagctggctgaaggcgaagtgcaag
ctgcgtcaggagttcgtcattggtggctattccgatcgcgaaggctcccgtactgaggtc
ggcagactctatcttggcgtctacgccgacggcgaactgcgttacaccggcggcgtcggt
acgggctgggacagcgccgcggcgacggacctgcgcaagcggctcgtgaaactgcaagtg
gacaaaagcccattttcgacggaagcccgagcgagccgtcgatggggaggccgccgcgcc
accgctgtgcaatgggttaagccgacgctggtcgccgaagtggaattctccgagtggacg
cccgaaggccatgttcgccacgcctcgttcaagggcctgcgcaccgaccatgccgcgaag
tcgatccggcgcgaagcggttcagaccgccgtgacaccccacggcatggccgcgatcaag
gtcacgaatcccgaacgcgtgatcgacaagaccgagggcatcaccaaagtcgaactggtg
cgctactacgagagcatcgcgatgctgatgctgccccatctgaaggaccgcccgctatcg
ctggtgcgcgccccggagggcatcgatgccccgacgttcttccaaaagcatgccgaaacc
gcgatgccggggctgaccgagcggccggcgtccctatggccgggacatgccgcgctgctg
acggccgactcggccgaagcgattgtcgcggccgcccagatgaatgtggtggagtttcac
acctggaactccactgcccgcgacatcgaccatcctgaccgggtcatcttcgacctcgat
cccggcgcaggcgtcgcttgggagacgatgctcgaggccgccatgttggtgcacgcgctg
ctggacgaactgggcctgcagtcgtggctgaagacgagcggcggcaaggggctacacgtc
gtcgtgccgctggcaccgcagcattcctacgatgaggtgaaagccttctcgcgggctgca
gttcagcatctggccgccaccctgccccagcgcttcaccgcacgttccggcgccaccaac
cgcaagggaaagatcttcgtcgactacctgcgcaatggcttctcgcaaaccaccgccgcc
gcgttctcagcgcgtgcccggcccggacttggggtctcaatgcctgtgtcgtgggagcag
ttgccgaaactcaagagtggcgggcaatggacgatccgggatgcccgtgaatatctgagc
ttccaggtcgcggacccatggtcgtcctattgggaaaccccacagatgttgaccgacgcg
atcgaacggctaagttaa

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