Crotalus tigris (Tiger rattlesnake): 120304082
Help
Entry
120304082 CDS
T08476
Symbol
ARID1A
Name
(RefSeq) AT-rich interactive domain-containing protein 1A
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120304082 (ARID1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ctig03000
]
120304082 (ARID1A)
03021 Transcription machinery [BR:
ctig03021
]
120304082 (ARID1A)
03036 Chromosome and associated proteins [BR:
ctig03036
]
120304082 (ARID1A)
Transcription factors [BR:
ctig03000
]
Eukaryotic type
Helix-turn-helix
ARID
120304082 (ARID1A)
Transcription machinery [BR:
ctig03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120304082 (ARID1A)
Chromosome and associated proteins [BR:
ctig03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
120304082 (ARID1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
120304082
NCBI-ProteinID:
XP_039190149
LinkDB
All DBs
Position
Unknown
AA seq
2269 aa
AA seq
DB search
MAAQVAPAAAAAASTLGAPAPSELKKAEAQQRDCSSEEAGGEAAERGGEKQSESEGPPGK
ELQDGAESNGGGAGAEPDLKSPNGNPGPRPVATLNNNLPEPPGSGSGGGGSNSSDGVGTP
PQQQQQQPPPPTHPAALPPPAYGFGQPYGRGAQAAAAVVAAAAFHQHGGQQSPGMAALQS
GGLEQPYSGPVGPPQGPPPPQNSHGVGSAEHGFPNHQYNNYYPAAGRSAGAYPPTPQAYA
LSSPRGNAQSPAQAGVKPPASVFQQQRFGAMGPSAGGAGSGSVGGPTQQPTSTPTLNQLL
TSPSSTRGYQGYPGADYGSGPQDGGATTKAPAAPDIASQYSGGTGQGWAAAGPGSQQRSH
HAPMSPGSTSAAGGQSLARSQQPSSPMDQMGKMRPQPYGGNNLYTQQQGPQSGQQQGHGY
PGQPYGPQTPQRYPVGTLSRTQSAMGSVSYAQQIPPYGQQGPTGYGQQSQTPYYNQQSPH
PQQQPSYAQQPPTQAPHAQPSYQQTQTQSQPPQLQSSQPPYSQPQPQPPHQQSPSPYPQQ
SAPGQQQHTQGQPPYTQQQSQSPYQQQQVQQSATSALAQPSATYPPSQSQQPSAYSQQRF
PPPQELSQDSFGSHASSATSMASSKGQEDVNLNLQSRPSSLPDLSGSIDDLPMGTEGALS
PGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAA
VPGNQMPPRPPSGQSDSLLHSSMNQSTIAPDRGYIQRNPQIPQYNSPQPGSALSPRQSSG
GQMHTGMGPYQQNSMGAYGPQGSQYGPQGGYPRQPNYTAMPNANYPSPGMGGSMNPMGAG
NQIHGQTGIPPYPGLPPGRGLSHAAMGNRPYGPNMTAMPPQVGSGMCPPPGGRKAQEAAA
AAMHAAAVNSIQNRPSGYPHINQGGMMGTGPPYGQGINSMAGMLNPQGPPYQMGGNMANN
SAGMAASPEMMGLGDVKLTPAAKMNNKADGTPKSESKSKKSSSSTTTNEKITKLYELGGE
PERKMWVDRYLAFAEEKAMGMNNLPAVGRKPLDLYRLYISVKEIGGLTQVNKNKKWRELA
TNLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIFATDSKKSQTKIQPPSPAGS
GSMQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQMAPLQGIRSNSVGLQDAFPDGSDPTF
QKRNSMTPNPGYQPSMNTSDMMGRMSYEPNKDPYGSMRKGSDPFMSSGQVPNSGMGDPYN
RATGPGMSNMAMGPRQHYPYSHFERVRTEAGMGPEASLGTGTPQPNILPSTPDSGMYSPS
RYSQQPQQRHDSFSNHFPTQGTSSGSPFPSQQSTLYQPQQQNYKRTMDGNYGPPAKRHEG
EIYNVPYSTGQGQAQQQLPPAQTQQTSQPQTAQPSPQQEMYNQYSGNTYSAADRRPATGP
QNQFPFQFGRERVSAPPGSSTQQSMPPQMIGGPIQSTPEGPQQGTMWQGRNDMGYSYPNR
QSTGSAPQGSAYHGVNRTEEMLHPDQRVNHEGPWPSHGNRQPPYGPSAPVPPMTRPPQPN
YQAQPSMQNHIPQVSSPAPLPRPVENRTSPSKSSFLHSGMKMQKAGPPVPASHVTPAAVQ
PPMIRRDITFPPGSVEATQPVLKQRRRLTMKDIGTPEAWRVMMSLKSGLLAESTWALDTI
NILLYDDNSIMTFNLSQLPGLLELLVEYFRRCLIEIFGILKEYEVGDPGQRTLLDPERCC
QSSNSPEGVEKEERQNSNCEVEEEEEEGEEEAAFANKVTAPLESNEEKLVSKFDKLPVKI
VQKNDPFVVDYSDKLGRVQEFESGLLHWRIGGGDTTEHIQTHFESKLELSLTHKRASCNS
VLRKRSVAEGNPVTREGESSAPDGPPEKRITATMDDMLSVRPASLAEEEVVKNVEVTKES
SKFPFGISPAQSHRNIKILEDEPHSKDETPLCTLLDWQDSLSKRCICVSNIIRSLSFVPG
NDFEMSKHPGLLLILGKLILLHHKHPERKQAPLTYEKEEEQDQGVSCNKVEWWWDCLEML
RENTLVTLANISGQLDLSPYPESICLPILDGLLHWAVCPSAEAQDPFPTLGPNAVLSPQR
LVLETLSKLSIQDNNVDLILATPPFNRLEKLYSTMVRFLSDRKNPVCREMAVVLLANLAQ
GDSLAARAIAVQKGSIGNLLGFLEDSLAATQFQQSQASLMHMQNPPFEPTSVDMMRRAAR
ALLALAKVDENHSEFTLYESRLLDISVSPLMNSLVSQVICDVLFLIGQS
NT seq
6810 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcaggtagcccccgccgccgccgccgctgccagcaccttgggtgccccggct
ccgtccgagctgaagaaagcggaggcgcagcagcgggattgttcatcggaggaggcgggg
ggcgaggcggcggagcgcggcggcgagaagcagtcggaaagtgaaggtcccccgggaaaa
gaactgcaggacggggccgagagcaatggcgggggcgccggggccgagcccgacctgaag
agccccaacgggaacccgggccctaggcccgtcgccaccctgaacaataacctcccggag
ccgcccggtagtggtagcggcggcggcggtagcaacagcagcgacggggtggggacgccg
ccgcagcagcaacagcagcaaccgccgcccccgactcatccggccgccttacccccgcca
gcctacgggttcgggcaaccctacggtcgaggcgcccaggcggctgcggccgtcgtcgcg
gccgctgctttccaccaacatggcggacaacaaagccctggcatggcagcgctgcagagc
gggggcctggagcagccgtactcggggcccgtggggcccccccaggggccgccccctccc
cagaactcccatggcgtcggcagcgcggagcacggcttccccaaccaccagtacaacaac
tactaccccgccgccgggcgcagcgccggcgcctacccgcctacccctcaggcctacgcc
ctgagctccccccggggaaacgctcaaagccccgctcaagccggggtgaaacctccggcg
tcggttttccagcagcagaggttcggggccatggggccctcggccggcggcgcaggaagc
ggcagcgttgggggccctacccagcaacccacgtcgacccccaccctcaaccagctgctc
acttcccctagctcgaccaggggctatcaaggataccccggggccgattacgggagcggc
ccccaggacggcggagcgacgaccaaggccccggccgcaccggacattgcttctcagtac
agtgggggcaccggccagggctgggcggcagccggcccgggaagccaacaaaggagccac
cacgcgcccatgagccccgggagcaccagcgccgccgggggacagtcgctcgccaggagc
caacagccatccagtccaatggatcagatggggaagatgagacctcagccttatggagga
aacaacttatacacacaacagcagggacctcagtcagggcaacagcaaggccatggatat
ccaggacagccatatgggccacagactccccagagatatccagtggggactctaagcagg
acgcaaagtgcaatgggcagtgtctcttatgcacagcagataccgccttatggacagcag
ggccctacaggttacgggcagcagagtcagaccccttattacaaccagcagagtcctcac
ccccagcaacagccttcttatgcccagcagccccccactcaggccccacatgctcagcct
tcttatcagcaaacgcaaactcagtctcagcctccccagcttcagtcatcccagcccccc
tattcacagccacagccacagccaccccaccagcagtccccatctccatatccccagcag
tcagccccaggccagcagcagcacacccagggtcagcctccctacactcagcagcagtcc
cagtccccttaccagcagcagcaagttcagcagtctgctacctcggcgctcgctcagcca
tcggcaacataccctccgtctcagtcacagcagccgtcagcctattctcagcagcgcttc
ccacctccacaggagttgtcacaggactcatttggttcccatgcatcgtctgccacatca
atggcttccagtaaagggcaagaagatgtgaatttgaatctgcagtcgagaccctctagc
ttaccggatctctctggttcaatagatgatttgcctatgggtaccgaaggagcactgagt
cctggcgtaagcacatcagggatttccagcagtcaaggagagcagagtaacccagctcag
tctcctttctctccacatacctctccgcacttgccaggcattcgaggaccttccccatcg
cccgttgggtcgccggctagcgttgctcagtcccgctctggtccactttctcctgctgca
gtgccaggcaaccaaatgccacctcgaccaccaagtggccaatcagatagcctcttgcat
tcctccatgaatcagtcaaccatagccccagatagaggttatatacagaggaatccacag
ataccccagtataattctcctcaacctgggtctgccttatctccacgtcagtcttctgga
ggacagatgcatacagggatgggaccgtaccaacaaaattctatgggcgcttatgggcct
cagggcagtcagtacggaccccaaggtggttatcccaggcagccaaactacactgcgatg
cccaatgcaaattaccccagcccaggaatgggaggaagcatgaacccaatgggagcaggg
aatcagatccatggtcagactggtataccaccctaccctggacttccaccagggagagga
ctgagccacgctgccatgggcaataggccgtatggacccaacatgaccgccatgcctccc
caagtaggaagtgggatgtgtcctccaccaggtggtaggaaagcacaagaagctgctgct
gctgctatgcatgctgctgctgtcaactcaatccagaacaggccatctggttaccctcac
attaaccaaggaggaatgatgggaactggtcctccctatggccaaggaattaatagcatg
gctggcatgctgaatccccagggtccgccctatcaaatgggtgggaatatggccaacaat
tctgcagggatggctgcaagtcctgaaatgatgggacttggagatgttaaattaacacct
gcagcaaaaatgaacaataaagcagatggaacaccaaaatctgaatccaagtcaaagaaa
tccagttcctccaccactacaaatgaaaagattactaaattatatgagctgggtggtgag
ccagagagaaagatgtgggtagatcgttatttagcctttgctgaggagaaagcaatggga
atgaacaatcttccagcagttggaaggaaacctttagacctgtatcgactctacatttct
gtgaaggagattggagggctgactcaggttaacaagaacaagaaatggcgggagttggct
accaatttgaatgtgggcacctctagcagtgcagctagctctctgaagaagcagtatatc
cagtgtctctatgcttttgagtgcaagattgaacgaggtgaagaccctcccccagacatc
tttgcaacagattccaagaaatcacagaccaaaatacagcctccatctccagcgggttca
ggctccatgcaaggtcctcagacacctcagtccactagtagctccatggccgaaggagga
gacttgaagcccccaactcctgcatctacaccgcatagtcaaatggcacctttgcaaggc
atcaggagtaactcagtaggccttcaggatgcctttcccgacggtagtgaccctactttc
cagaagaggaactctatgactccaaatccagggtaccagcccagcatgaatacttccgac
atgatgggtcgcatgtcctatgagccaaataaggatccatatggcagtatgagaaaagga
agtgatccctttatgtcctcagggcaagttcctaacagtggtatgggagatccttataat
cgtgctacaggtccagggatgagtaatatggctatgggaccgaggcaacattatccgtac
agccattttgaaagagtgagaaccgaagcaggtatgggacctgaagccagcttgggaact
ggaacaccccagcccaacatcttgccttccactccggattcaggaatgtattctccaagc
cgctattctcaacaaccacagcaacggcatgattcctttagcaatcactttcctacacaa
ggtacatcctctgggagtccctttcctagccaacagtccaccttatatcagccacagcag
cagaactacaagagaacaatggatggcaactatggtccaccagccaaaagacatgaagga
gagatatacaacgtaccatatagcacaggccaaggacaagcccagcaacagctccctcca
gcacaaacccaacaaacaagccagccacaaacagctcaaccttccccacagcaggaaatg
tataaccagtacagtgggaatacatactctgctgcagatcgccggcctgctactgggcct
cagaaccagttcccattccagtttggcagagagagggtctctgctccccctggttccagt
acgcagcagagcatgcctcctcagatgataggtggcccaatacagtccactccggaaggc
ccacaacagggcaccatgtggcaagggcgtaatgatatgggttacagctatccaaatcgg
cagagcactggctctgcgccccaagggtctgcctatcacggagtgaatcgaaccgaagaa
atgctacatccagatcagagggttaaccatgagggaccgtggccttctcatggcaaccgc
caacctccttacggtccttctgcccccgtgcccccaatgacaaggccgccacagcctaac
taccaggcccaacccagcatgcagaatcacattcctcaggtatctagtccagcacctctt
cccaggccggtggaaaaccgcacctctccaagtaaatcttcattcctgcattcgggaatg
aagatgcagaaggcagggcctcctgttccagcctcccatgtaacaccagcagctgtccaa
cctcctatgatacgacgggacatcactttcccgcctggctcagtggaagctacacaacca
gtgctgaagcagaggcggcgcctgaccatgaaagatatcggaactcctgaagcatggaga
gtgatgatgtctctaaagtctgggttactggctgaaagtacatgggccttagataccata
aacatcctactctatgatgacaacagcataatgaccttcaacctcagccagctgccagga
ttgttggaactattggtggaatatttccgacgttgcctcattgaaatctttggaatcctg
aaggaatatgaggtgggcgatccagggcaaagaactctgttggatcctgaaaggtgttgc
caatcttcaaattctcctgaaggagtggagaaagaagagcgacagaattctaactgcgag
gtggaggaagaggaggaagaaggggaggaagaggctgcttttgcaaataaagtcacagca
cctctagaaagtaacgaggagaagctagtcagtaaatttgacaaacttccagtcaagata
gtgcagaagaacgatccattcgtggtagattattcagataagcttggccgggtacaggaa
tttgagagtggactgttgcactggcggattggtgggggagacaccactgaacacatccag
acccactttgaaagcaaattggagttatcgctgactcataaacgagcttcctgcaactct
gttttgagaaaacgctctgtagccgagggcaaccctgtcactcgagagggagagtcctct
gcacctgatggtcctccagagaagaggataacagctactatggatgacatgctttcagtc
cgaccagcgtccttggcagaagaggaggtggtcaaaaatgtggaggtaacgaaggaaagc
agcaaatttccatttggcattagtccagctcagagccatagaaatatcaaaatattggag
gacgaacctcacagtaaagacgaaacgcccctctgcacgcttctggactggcaggactcg
ctgtctaaacgctgcatctgtgtatctaacatcatcaggagtttatcatttgtgccaggc
aatgattttgagatgtcaaaacatcctggtctgctgttgatcctagggaaactgattctc
ttgcaccataagcacccagaacgcaagcaggcacccctgacgtatgagaaggaagaggag
caggaccaaggagtgagctgcaacaaagtggagtggtggtgggactgcctggagatgctg
cgtgaaaacactttggtcacgctggccaacatctctggccagttggacctttctccctat
ccagagagcatctgtttgcctatactggatggacttctccattgggcagtgtgtccttca
gcagaagcccaagaccctttcccaacccttgggcctaatgctgtcctctcgcctcagaga
ctggttttggaaaccctcagcaaactcagcatccaggacaacaatgtggatttgatcctt
gcaacgccaccttttaatcgcttggagaaactctacagcaccatggtgcgttttcttagt
gaccgaaagaatcccgtatgtcgggagatggctgtggtactactggccaatttggcacag
ggtgacagcttggcagctagagccattgccgtgcagaagggcagcattggcaatctgttg
ggctttttggaggatagcctggcagctactcagttccagcagagccaagcgagcttgatg
cacatgcagaaccctccctttgagccgaccagtgtggacatgatgcgtcgggcagctcgt
gcgctgctcgccctggccaaagtggacgagaaccactcagagttcacgttatacgaatca
cggctgttggacatctctgtgtcacctctgatgaactcattggtttcgcaagttatttgt
gatgtactgtttttaattggccaatcatga
DBGET
integrated database retrieval system
