Acetivibrio thermocellus DSM 1313: Clo1313_2922
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Entry
Clo1313_2922 CDS
T01933
Name
(GenBank) helicase, RecD/TraA family
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
ctx
Acetivibrio thermocellus DSM 1313
Pathway
ctx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ctx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Clo1313_2922
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ctx03400
]
Clo1313_2922
Enzymes [BR:
ctx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Clo1313_2922
DNA repair and recombination proteins [BR:
ctx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Clo1313_2922
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_4
SH3_13
UvrD_C_2
Viral_helicase1
AAA_11
HHH_5
PIF1
nSTAND3
AAA_22
UvrD-helicase
NTPase_1
Helicase_RecD
SLFN-g3_helicase
UvrD_C
DEAD
ATPase_2
AAA
T2SSE
AAA_28
AAA_16
AAA_29
HHH_2
PhoH
MeaB
MobB
RsgA_GTPase
bpMoxR
KAP_NTPase
Ole_e_6
ABC_tran
cobW
AAA_12
TsaE
AAA_5
NB-ARC
AAA_18
AAA_7
NACHT
Mg_chelatase
ResIII
AAA_14
AAA_24
ATP_bind_1
Motif
Other DBs
NCBI-ProteinID:
ADU75902
LinkDB
All DBs
Position
complement(3428203..3430434)
Genome browser
AA seq
743 aa
AA seq
DB search
MVTIEGTVEEIIFSNEANGYTVCEIKCDKEVITVVGYMPFINVGETLRVSGKWVIHPDYG
EQLKVELYEKLLPETPEAIERYLASGLIKGVGPATAKKIVKKFADQTLHIISHHPQRLAE
IKGITMEKALRIGQAFEEQRGLRDVVLFLQEYGISPTYCAKIYKTFGPDTIEEIRKNPYR
LSDEIFGISFRTADRIAKSLGIDPYSKYRISSGIKYVLSRAATEGHTFLEEEMLKSYTSK
LLDINIDSIEDALVSLVLNKSVYVDRNDGMSKIYLSSFYHAELGVCRKLVELSQVRYSAD
MEDFEERIKQVQKKEGIILADKQKEAIREAMTNGVLVITGGPGTGKTTIIKSIISLLESE
GYEFALAAPTGRAAKRMSEATGYEAKTIHRLLEIGYTSNEDELVFMRTEDNPIEADVVII
DEMSMVDIILMYHLLKAIVCGTRLILVGDVDQLPSVGPGNVLRDIIKSGMIKTVKLSEIF
RQAGESMIVVNAHRINRGEHPILNEREKDFFFVTRNSQNDILKTVVDLCTRRIPDTYGYD
PMKQIQVLTPMRKGTVGVANLNIELQKVLNPEDGKKKQKAFRNYVFREGDRVMQIKNNYN
LRWEKINGPGQEGAGVFNGDMGIIVEIDDEEQKIKVLFDDEKLVEYDYTILDELEPAYAV
TIHKSQGSEFPVVILPVFPGPSVLMTRNLLYTAITRARELVILVGNKDCLYGMIMNDRET
KRNSDLAEKLRKCIVGVDWLKQW
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
ttggtaactattgaaggtactgttgaagaaattatattctccaatgaagccaatggatat
accgtttgtgagataaaatgcgataaagaagttattaccgtcgtgggatatatgcctttt
atcaatgtgggtgagacgctgagagtttcggggaagtgggtcatccaccctgactatggc
gagcagctcaaagtggagctgtatgaaaagctgcttccggaaacgccggaggctatagaa
aggtatcttgcgtcagggcttatcaagggagtcggccctgcaaccgcaaaaaagattgta
aagaaattcgcagaccaaactcttcatattataagtcatcacccgcagaggcttgccgag
ataaaaggtattaccatggaaaaggctttgagaataggacaggcctttgaggagcaaaga
ggccttcgggatgttgtgctgtttctgcaggagtatggcataagtccgacttattgtgcc
aaaatatacaagactttcggaccggataccatagaagaaatcaggaaaaacccttaccgg
ctttcagacgagattttcggaataagtttcagaacggctgaccggatagccaaaagcctt
ggaatagacccttactcaaaatacaggatttcaagcggtatcaaatatgtgttaagccgg
gccgcgacagaaggtcatacttttttggaagaagagatgctaaaaagttatacgtcaaaa
cttttggacatcaacattgacagcattgaagacgctctcgtttcccttgtgctgaataag
tcggtgtatgtggacagaaatgacgggatgtcaaagatatatttgagttcattttaccat
gcggagctgggagtatgcagaaagctggtggaactttcccaggtaaggtatagcgccgat
atggaggactttgaggaaaggataaagcaggttcagaaaaaagagggtataatacttgcg
gacaagcaaaaggaagccatcagggaagcaatgactaacggcgtgcttgtcataaccgga
gggccgggcacaggcaagacaaccataatcaaaagcattataagccttcttgaaagtgaa
ggatatgagtttgcccttgcagctcccaccggcagggcggcaaagaggatgtccgaggct
acgggctatgaggcaaaaaccattcacaggctccttgagattggttatacctcaaatgag
gacgagcttgtgtttatgaggacggaagacaatcccatagaggctgatgtggtgataatt
gacgagatgtccatggtggatataattctcatgtaccacctgcttaaagctattgtctgc
ggaacaaggcttatactggtcggagatgtggatcagcttccttcggtggggccgggaaat
gtcctcagggatataataaaaagtgggatgatcaagaccgtaaagttgtctgaaatattc
cggcaggccggagagagtatgatagttgtcaatgcccacaggataaaccgcggagagcat
cctatattaaatgagagggaaaaagattttttctttgtgacaagaaattcccagaatgat
attttaaaaaccgtggttgatctttgtacaagaagaatacccgatacttacggatatgat
cccatgaaacagatacaggtattgacgcctatgagaaagggtacggtgggagtggcaaac
ctcaatattgagcttcagaaggttttaaatcccgaagacggaaaaaagaaacaaaaagcc
ttcagaaactatgtattccgtgagggagaccgggtgatgcagataaaaaacaactacaac
ctcagatgggaaaaaatcaacggcccgggccaggaaggagcgggtgtgtttaacggcgat
atgggaattatagttgaaatagatgatgaagagcaaaaaataaaggttttgtttgacgat
gaaaagcttgtggaatatgattacactattttggacgagcttgagccggcctatgccgtt
accattcacaaaagccagggaagtgagtttcccgtggtgatacttccggtgtttcccggg
ccttcggtgcttatgaccagaaatcttttgtacactgcgataacaagggcgagggagctg
gtgatactggtgggcaataaagattgtctttacgggatgattatgaacgatcgggagacc
aaaagaaactcggatttggctgaaaaacttagaaaatgcatagtgggagtggactggttg
aaacaatggtaa
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