KEGG   Acetivibrio thermocellus DSM 1313: Clo1313_2922
Entry
Clo1313_2922      CDS       T01933                                 
Name
(GenBank) helicase, RecD/TraA family
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
ctx  Acetivibrio thermocellus DSM 1313
Pathway
ctx03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ctx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    Clo1313_2922
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ctx03400]
    Clo1313_2922
Enzymes [BR:ctx01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     Clo1313_2922
DNA repair and recombination proteins [BR:ctx03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     Clo1313_2922
SSDB
Motif
Pfam: AAA_19 AAA_30 HHH_4 SH3_13 UvrD_C_2 Viral_helicase1 AAA_11 HHH_5 PIF1 nSTAND3 AAA_22 UvrD-helicase NTPase_1 Helicase_RecD SLFN-g3_helicase UvrD_C DEAD ATPase_2 AAA T2SSE AAA_28 AAA_16 AAA_29 HHH_2 PhoH MeaB MobB RsgA_GTPase bpMoxR KAP_NTPase Ole_e_6 ABC_tran cobW AAA_12 TsaE AAA_5 NB-ARC AAA_18 AAA_7 NACHT Mg_chelatase ResIII AAA_14 AAA_24 ATP_bind_1
Other DBs
NCBI-ProteinID: ADU75902
LinkDB
Position
complement(3428203..3430434)
AA seq 743 aa
MVTIEGTVEEIIFSNEANGYTVCEIKCDKEVITVVGYMPFINVGETLRVSGKWVIHPDYG
EQLKVELYEKLLPETPEAIERYLASGLIKGVGPATAKKIVKKFADQTLHIISHHPQRLAE
IKGITMEKALRIGQAFEEQRGLRDVVLFLQEYGISPTYCAKIYKTFGPDTIEEIRKNPYR
LSDEIFGISFRTADRIAKSLGIDPYSKYRISSGIKYVLSRAATEGHTFLEEEMLKSYTSK
LLDINIDSIEDALVSLVLNKSVYVDRNDGMSKIYLSSFYHAELGVCRKLVELSQVRYSAD
MEDFEERIKQVQKKEGIILADKQKEAIREAMTNGVLVITGGPGTGKTTIIKSIISLLESE
GYEFALAAPTGRAAKRMSEATGYEAKTIHRLLEIGYTSNEDELVFMRTEDNPIEADVVII
DEMSMVDIILMYHLLKAIVCGTRLILVGDVDQLPSVGPGNVLRDIIKSGMIKTVKLSEIF
RQAGESMIVVNAHRINRGEHPILNEREKDFFFVTRNSQNDILKTVVDLCTRRIPDTYGYD
PMKQIQVLTPMRKGTVGVANLNIELQKVLNPEDGKKKQKAFRNYVFREGDRVMQIKNNYN
LRWEKINGPGQEGAGVFNGDMGIIVEIDDEEQKIKVLFDDEKLVEYDYTILDELEPAYAV
TIHKSQGSEFPVVILPVFPGPSVLMTRNLLYTAITRARELVILVGNKDCLYGMIMNDRET
KRNSDLAEKLRKCIVGVDWLKQW
NT seq 2232 nt   +upstreamnt  +downstreamnt
ttggtaactattgaaggtactgttgaagaaattatattctccaatgaagccaatggatat
accgtttgtgagataaaatgcgataaagaagttattaccgtcgtgggatatatgcctttt
atcaatgtgggtgagacgctgagagtttcggggaagtgggtcatccaccctgactatggc
gagcagctcaaagtggagctgtatgaaaagctgcttccggaaacgccggaggctatagaa
aggtatcttgcgtcagggcttatcaagggagtcggccctgcaaccgcaaaaaagattgta
aagaaattcgcagaccaaactcttcatattataagtcatcacccgcagaggcttgccgag
ataaaaggtattaccatggaaaaggctttgagaataggacaggcctttgaggagcaaaga
ggccttcgggatgttgtgctgtttctgcaggagtatggcataagtccgacttattgtgcc
aaaatatacaagactttcggaccggataccatagaagaaatcaggaaaaacccttaccgg
ctttcagacgagattttcggaataagtttcagaacggctgaccggatagccaaaagcctt
ggaatagacccttactcaaaatacaggatttcaagcggtatcaaatatgtgttaagccgg
gccgcgacagaaggtcatacttttttggaagaagagatgctaaaaagttatacgtcaaaa
cttttggacatcaacattgacagcattgaagacgctctcgtttcccttgtgctgaataag
tcggtgtatgtggacagaaatgacgggatgtcaaagatatatttgagttcattttaccat
gcggagctgggagtatgcagaaagctggtggaactttcccaggtaaggtatagcgccgat
atggaggactttgaggaaaggataaagcaggttcagaaaaaagagggtataatacttgcg
gacaagcaaaaggaagccatcagggaagcaatgactaacggcgtgcttgtcataaccgga
gggccgggcacaggcaagacaaccataatcaaaagcattataagccttcttgaaagtgaa
ggatatgagtttgcccttgcagctcccaccggcagggcggcaaagaggatgtccgaggct
acgggctatgaggcaaaaaccattcacaggctccttgagattggttatacctcaaatgag
gacgagcttgtgtttatgaggacggaagacaatcccatagaggctgatgtggtgataatt
gacgagatgtccatggtggatataattctcatgtaccacctgcttaaagctattgtctgc
ggaacaaggcttatactggtcggagatgtggatcagcttccttcggtggggccgggaaat
gtcctcagggatataataaaaagtgggatgatcaagaccgtaaagttgtctgaaatattc
cggcaggccggagagagtatgatagttgtcaatgcccacaggataaaccgcggagagcat
cctatattaaatgagagggaaaaagattttttctttgtgacaagaaattcccagaatgat
attttaaaaaccgtggttgatctttgtacaagaagaatacccgatacttacggatatgat
cccatgaaacagatacaggtattgacgcctatgagaaagggtacggtgggagtggcaaac
ctcaatattgagcttcagaaggttttaaatcccgaagacggaaaaaagaaacaaaaagcc
ttcagaaactatgtattccgtgagggagaccgggtgatgcagataaaaaacaactacaac
ctcagatgggaaaaaatcaacggcccgggccaggaaggagcgggtgtgtttaacggcgat
atgggaattatagttgaaatagatgatgaagagcaaaaaataaaggttttgtttgacgat
gaaaagcttgtggaatatgattacactattttggacgagcttgagccggcctatgccgtt
accattcacaaaagccagggaagtgagtttcccgtggtgatacttccggtgtttcccggg
ccttcggtgcttatgaccagaaatcttttgtacactgcgataacaagggcgagggagctg
gtgatactggtgggcaataaagattgtctttacgggatgattatgaacgatcgggagacc
aaaagaaactcggatttggctgaaaaacttagaaaatgcatagtgggagtggactggttg
aaacaatggtaa

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