Cuculus canorus (common cuckoo): 104055214
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Entry
104055214 CDS
T08597
Symbol
COL24A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XXIV) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
104055214 (COL24A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cuca00536
]
104055214 (COL24A1)
Glycosaminoglycan binding proteins [BR:
cuca00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104055214 (COL24A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
104055214
NCBI-ProteinID:
XP_009554611
LinkDB
All DBs
Position
Unknown
AA seq
1729 aa
AA seq
DB search
MEKLPGFTDRVIDGMERKKQTVGQWRQEKMSPLVEFQPCSCAVPPLELVELLRCATPGLR
QWKTLLFVAVCVAVGVAQVPKQAIDVLHQLGLVKDVQQLSETAVPSTSPLLPRGVHLTAS
GVVLTSDAHIESPIAQVLPSSLGRQFTILVGLYSYRVKNAFLFSIRKKSRLQFGVQLLPR
KVVVFTGGKESVHIDYSVHNEQWHSFAIDIRDKSVSLFAECGKKYYSREILSEVEAFGLD
GLFTLGRMNSHSVSFEGVICQLDIIPSAEASANYCKYVKQQCRQAETYRSLRGAPRVSDG
LDVFSETMIDEKYHSEDIPAYRRDETSTVPVNNIAPIRFLPEHLEWRNISASELPEAKSL
LLEAWPEAQLQENVSLHQQGTSERRNITKTPTGSYADTLDNATEDAGRKNEPSLITSVKQ
GKTKSKETDRTNQRLDEPSKNRHISNTTLSGLPADLSLDNQLGPGQEGAFDADETYPVEN
SYDVGIDNYAYNYEDLDKMFEMGSFRGPKGEPGPPGPPGPPGLPGPSGKRGPRGIPGPHG
NPGLPGLPGPKGPKGDPGFSPGQAKCGEKGDPGPIGFPGPPGIKGQKGLKGYLGLRGPRG
EQGIPGLAGSPGAVGYPGRQGLAGPEGNPGPKGNRGFIGPPGVAGQPGPEGERGIPGLRG
KRGPKGRQGFPGDFGNRGPPGPDGSPGIVGGVGPPGFPGLRGGTGPAGPSGPSGIPGPAG
LPGSVGQPGMKGDKGEHGLAGEPGDQGYPGDKGALGLPGPPGIRGKPGPPGKIGDPGSRG
PLGPPGPEGFPGDIGVPGLNGPEGPKGLLGDRGPPGPQGPKGVEGEAGPTGPIGGVGPKG
KLGQKGYVGDPGPEGLKGEQGDQGNPGKTGEAGPVGLPGEAGPSGSLGEKGERGSPGPVG
PPGEKGVMGYPGPPGGPGPVGPEGLPGPSGTRGPPGPQGPKGRRGPRGLDGPPGEPGAQG
IKGERGDLGKKGLPGLIGKAGNPGERGDQGALGLLGPPGATGDKGPMGKPGPRGQPGDAG
PVGEMGLEGPPGPEGEPGLEGEPGAKGDIGPAGKAGEPGDQGLRGEPGPPGEDGLQGKDG
LKGDTGDQGLPGEGGEKGEMGLPGIAGPPGEPGIMGIQGPEGTPGSPGQRGRSGKKGEKG
QLGPPGETGPAGDSGHPGEVGPKGARGTRGPLGHPGGMGPEGETGIPGYGGHQGPPGPPG
PPGPKGEKGYPGEDSTVPGPPGPIGEPGSRGERGDRGEPGDEGYKGHTGLPGLRGPVGQQ
GPPGEPGELGERGPKGERGSQGPAGKKGATGQAGKPGTPGNPGPAGQKGAVGYPXPEGIX
GKPGLSGQPGPKGNKGKSGLPGLAGYPGARGPKGLPGMPGPMGAPGLKGEKGLLGHPGKR
GKRGHPGSQGDQGPAGDTGPKGQTGEDGDQGLMGFQGFPGPKGPAGDIGLVGILGPKGPT
GQVGYIGPVGQEGVTGPTGRAGPRGEKGRRGEMGPQGPQGQPGPPGPPGPPGPRKQVDIN
AAVRALLDSNAALQMEKYQNTEVTLLDHSTEIFKTLHYLSNLLHSIKNPLGTRENPARIC
RDLLNCERKVADGKYWIDPNIGCPSDAIEVFCNFTAGGQTCLTPLSVTKLEFGVGKVQMN
FLHLLSSEATHSITFHCLNTPMWGLNKAGGQKTSISFRGWNGQIFKANTLLEPKVLVDEC
MIEDGSWHKTQFFFHTQDTHQLPVIQVNALPHLKLGQQHFIESGSVCFL
NT seq
5190 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagttacctggttttactgatcgtgttattgatggaatggaaaggaaaaagcag
actgtaggacagtggcggcaggaaaaaatgagcccactggtggagttccagccctgctcc
tgcgctgtgccacccctggaactggtggagctcctgcgctgtgccacccctggtctccgg
cagtggaaaactcttctttttgttgcagtatgtgtagctgtgggcgttgcgcaagtaccc
aaacaagccatagatgttcttcaccagctaggactcgtgaaagatgttcagcagctatca
gagacagcggtgccctcaacgtcacctctgttgcctcggggtgttcatctgactgcatca
ggagttgtattaactagtgatgcacatatcgaatcccccatcgctcaagtcctaccatcc
agcctagggcgtcagttcaccatattagttgggctgtattcttacagagtaaaaaatgct
ttccttttcagtattaggaagaaaagcagactgcagtttggtgtccagttgctaccaaga
aaggtagtggtgttcactggagggaaggagtctgtacacattgattatagcgttcataat
gaacaatggcattcatttgccattgacattagggacaagagcgtctcgttatttgccgag
tgtggaaagaagtactacagcagggaaatactttctgaagtggaggcgtttggtttggat
ggtttgtttaccctgggaaggatgaactctcactctgtcagctttgaaggggttatatgt
cagctagatattattccctctgcagaggcctctgcaaactattgtaaatatgtgaaacag
cagtgtcgccaggctgaaacatatcgatctctgcgaggagctccacgtgtgtcggatggg
ctggatgttttttcagagacaatgattgatgagaaataccactcagaagacatccctgcc
tatagaagggacgaaacatcaacagttcctgttaacaacattgctccgatacgctttcta
ccagaacacttagagtggagaaatatctctgcatcagagcttccagaagccaaatctctg
ctcttggaagcttggcctgaagcacaactccaggagaatgtcagtcttcatcagcagggg
acgagcgaaaggagaaacatcactaaaacccccacaggatcgtatgcagatactttagat
aacgccacagaagatgcaggcaggaaaaatgagccttctctgatcacctctgtaaagcag
ggtaaaactaaaagcaaggaaacggacagaacaaaccagcgtttagatgaaccaagcaaa
aatcggcacatctccaacacaaccctgtctggtttgcctgctgacctctctctggataat
cagctcggtccagggcaggaaggtgcatttgatgctgatgagacttacccagtggaaaac
agttatgacgttggtattgataattatgcttataactatgaagatcttgacaaaatgttt
gaaatgggaagtttcagaggtccaaagggggaacctggacctcctggtcctccaggtcct
ccaggtttacctggtccatcaggaaagagaggtcctcggggtattccaggaccacatggt
aatccaggtttgccaggattgccaggaccaaagggccctaaaggagatccaggattctct
ccaggacaggcaaaatgtggggaaaagggggatccaggccccataggctttccaggccca
ccaggtatcaaaggccagaagggtcttaagggttatctgggactgcgaggaccacggggt
gagcagggaattccaggcttggctggcagtcctggggcagttggttaccctggcaggcag
ggcttagctggaccggaaggtaacccaggtcctaaaggtaacagaggtttcattggacct
ccaggtgtggcgggacaaccgggacctgaaggagaaaggggcatcccaggcctccgtgga
aaaagaggtcctaaagggagacagggttttccaggtgactttggaaacagaggccccccc
ggtccagatgggagtcccggaattgttggtggtgttggtcctcctggatttccaggacta
agaggaggcactgggccagcaggaccaagcggaccatcaggaattccagggcccgcgggt
ctcccagggagtgtgggacagcctggaatgaaaggtgataagggtgaacatggccttgca
ggagagccaggagaccaagggtacccaggagacaagggtgctctgggtttaccaggaccc
ccagggatcagaggaaagccaggacccccagggaaaattggagatcctggatcccgtgga
ccattgggtcctccaggacctgagggtttccctggagatattggcgtacctggattgaat
ggccctgaaggtcctaagggacttctgggtgaccgagggcctccagggccacaaggcccc
aaaggagttgagggagaagcgggaccaactggacctattggaggagtcggccccaaaggc
aagctgggacagaaaggttatgtaggagatcctggaccagaaggtttaaagggagaacaa
ggagaccaaggaaaccctggaaaaaccggtgaagcaggaccagttggcttacctggagaa
gctgggccatctggaagtcttggcgaaaagggagagcgcggcagcccaggaccagtcggt
cctcctggagagaaaggtgtcatgggctacccaggacctccaggaggccctggacctgtg
gggccggaaggtttacctggaccttcagggacacgaggaccaccagggccacaaggacct
aagggaagaagagggccaagaggtctggatggtcctccaggagaaccaggagctcaaggc
attaagggagaaagaggtgatctgggaaagaaaggacttcccgggctcattggtaaagct
ggaaatcctggagaaagaggagatcagggtgcgcttggtttgcttgggcctcccggagcc
acaggagacaagggaccaatgggaaagccaggtccaagaggacaaccaggggatgccggc
cctgttggagaaatgggtttagagggacctcctggccctgaaggagaacctggcctggag
ggagaaccaggtgcaaagggggacattggacctgctggtaaggctggagaaccaggcgac
caaggtttaaggggtgaaccaggacctccaggagaagatggccttcaaggaaaagatggc
ctaaagggagacactggagaccagggacttcctggagaagggggtgaaaaaggagaaatg
gggttaccaggaattgctggacctcctggtgaacctggcataatgggcattcagggtccc
gaaggaacaccaggaagtccaggacagaggggccgttcaggaaagaagggggaaaagggg
cagcttggccctcctggagaaactggacctgctggagactctggccaccctggagaagtt
ggtcccaaaggcgcaagaggaactcgaggtcccttgggacacccaggaggaatgggacct
gaaggagagacaggaattccaggttatgggggtcaccaagggcctccagggcctccaggg
ccacctggacccaaaggagaaaagggttacccaggtgaagacagcacagttcctggacca
cctgggcccataggtgaaccaggttctaggggtgaacgtggagatagaggagaacctggt
gatgagggctacaagggtcatactggtcttccagggcttagaggacctgttggacagcag
ggacctccgggagagccaggtgaattgggagagcgaggaccaaaaggagaaagagggtca
caaggacccgcagggaagaaaggagcgacgggccaggcaggcaaacctggaactcctgga
aatccagggccagcggggcagaaaggagcagttgggtacccttgaccagaaggcatcnng
ggcaagcctgggctctcagggcagcctggcccgaagggtaataaaggaaagtcaggctta
ccaggtctggcaggttatcctggagctcgaggtcccaagggattgccgggcatgccaggg
cccatgggagcacctggactgaagggtgagaaagggcttctgggtcatccaggaaagcga
ggcaagagaggccatccaggatcacaaggtgaccaaggaccagcaggagacactggacca
aaaggacagactggagaagatggagatcaaggtttaatggggtttcaaggattcccaggt
ccaaaaggtcctgcaggggacattggcttagttggaattctgggcccgaaaggtccaaca
ggccaagttggatacattggccccgttggccaagaaggcgtaacaggtccaacaggcagg
gctgggccaagaggtgagaagggcagaaggggtgaaatggggcctcagggaccgcagggg
cagccaggaccacctggaccacctggaccaccaggaccaagaaaacaagtggacatcaat
gctgctgttcgagcattgcttgattcaaatgctgcactgcagatggagaaataccagaac
actgaagtaactttactagaccacagtacagagatattcaaaacgctgcactaccttagc
aatttactgcacagcatcaagaacccccttggcacgcgggagaacccagcgcgcatctgc
agggatttgctcaactgtgaacgtaaagtggcagacggaaaatactggattgacccaaat
attggctgtccttctgatgccattgaagttttctgcaacttcactgcaggtggtcagacg
tgtttaacgccgctctctgtgacaaagctggagttcggcgtcggaaaagtgcagatgaac
ttccttcatttgctgagctctgaagcaacccatagcatcacgtttcattgtctgaacaca
ccgatgtggggattaaataaagcaggtggccagaaaacttctattagcttcagaggatgg
aacggtcagatatttaaagcaaatactctacttgaaccgaaggtgcttgtggatgaatgc
atgattgaagatggcagctggcataagacacagttcttctttcacactcaggacacgcat
cagcttccagttattcaagttaacgcgcttcctcatctcaaactgggacagcagcacttc
atagaaagtggttcggtgtgcttcctttaa
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integrated database retrieval system
