Cuculus canorus (common cuckoo): 104064602
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Entry
104064602 CDS
T08597
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104064602 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cuca03041
]
104064602 (DHX38)
Enzymes [BR:
cuca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104064602 (DHX38)
Spliceosome [BR:
cuca03041
]
Complex C
Other components
Step II factors
104064602 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
T2SSE
PhoH
SRP54
Microtub_bd
AAA_30
AAA_16
AAA_7
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
104064602
NCBI-ProteinID:
XP_009565250
LinkDB
All DBs
Position
Unknown
AA seq
1125 aa
AA seq
DB search
HYRSVRVETPSYTGGVSEEFWERSRQRERERREHGVFASSKEEKERKKDHNRDRDHDRKR
DREERDKSRHSSRSQRDGSSERSSRRSEPESPRHRPKDAATPSRSSWEEDDNGYSSACRS
QWESPSPTPSCRDSERSHRASSQRDTDRRDRDRSVRSKYSDRTPLPTPSYKYNEWADDRR
HLGSTPRLSRGRGRREDGEEGIAFETEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLAY
SSEEYVKKREQHLHKRRQKCISAQRWQINEDNERWETNRMLTSGVVHRIEVDEDFEEDNS
AKVHLLVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDLAIIARKGSQLVRKHREQKERKR
AQHKHWELAGTKLGDIMGIKKEDEKDEMVTDDGKVDYRTEQKFAEHMKEKSEASSEFAKK
KSILEQRQYLPIFAVQQELLSILRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGC
TQPRRVAAMSVAKRVSEEMGVRLGEEVGYAIRFEDCTSENTVIKYMTDGILLRESLREAD
LDNYSAIIMDEAHERSLNTDVLFGLLREVVARRSDLKLVVTSATMDADKFASFFGNVPIF
HIPGRTFPVDILFSKTPQEDYVEAAVKQALQVHLSGAPGDILVFMPGQEDIEVTSEQIVE
HLEELEKAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVID
SGYCKLKVFNPRIGMDALQIYPISQANANQRAGRAGRTGPGHCFRLYTQSAYKNELLTTT
VPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTST
GRLMVEFPLDPALSKMLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQVREKFA
VPESDHLTYLNVYVQWKNNSYSTLWCNQHFIHAKAMRKVREVRAQLKDIMVQQRMSLASC
GSDWDIVRKCICAAYFHQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHEL
VMTTKEYMQCVTAVDGEWLAELGPMFYSIKHAGKSRQENRRRAKEEVSAMEEEMALAEEQ
LRARREEQERRNPMGSSRSTKIYTPGRKEQGEPLTPRHTPARFGL
NT seq
3379 nt
NT seq
+upstream
nt +downstream
nt
gcattaccgttctgtccgtgtggaaacaccttcctacacagggggtgtcagtgaggaatt
ttgggaacgcagccggcagcgggaaagggagcgtcgggagcatggtgtctttgcctcctc
caaggaggagaaggaacggaagaaggaccacaatagggatcgggatcacgatcgtaaacg
ggaccgcgaggaacgggacaaaagtcgtcacagcagcagatcacagagagatggctcatc
ggagcggagcagcaggaggagcgagccagagagtcccagacatcggcctaaagatgcagc
cacgccgtctcgctccagctgggaggaagatgataatggttacagcagtgcctgccgctc
gcagtgggaatctccctcacccacaccttcctgtcgagactcggagcgcagccaccgagc
atcatcgcagcgggacacggaccggagagaccgggacaggtctgtgaggagcaagtattc
agataggacaccattgcccaccccatcatacaaatacaatgagtgggctgacgaccggag
gcacctggggtccacgccgcggctgtccagagggagagggcggcgtgaagatggggagga
gggcattgcctttgagacagaggaggagcggcagcagtgggaggacgatcagcggcaagc
tgaccgggactggtacatgatggatgaaggctatgacgagtttcacaaccccttggccta
ttcctctgaggagtacgtgaagaaacgggaacagcacttgcacaagcggaggcagaagtg
catctcggcacagcggtggcagatcaatgaggataacgagcgctgggagacgaatcgcat
gctaaccagtggtgtggttcatcggattgaagtggatgaagattttgaggaggataactc
tgctaaagtgcatctgttggtgcacaacctggtgcctcctttcctagatggaaggattgt
cttcaccaagcagccagagccagtcatccctgtcaaggatgccacctcagatttggccat
catagcccggaaaggcagccagttggtgcgcaagcacagggagcaaaaggagcgtaagag
ggctcagcataaacactgggagctggcaggcacaaaactgggagacattatggggattaa
gaaagaggatgagaaggatgagatggtgacagatgatggcaaagtagattacaggactga
gcagaagtttgccgaacatatgaaggaaaaaagtgaagccagcagtgagttcgccaagaa
gaaatcaatcctggagcagagacaatatctgcccatctttgctgtgcagcaggagctgct
ctccatcctcagagacaatagcattgtgattgtggtgggggagacggggagcgggaagac
gacgcagttgacgcagtacctccatgaggatggttacacagactatggcatgatcggttg
tacccagccccgccgagtggcagctatgtcagtcgccaagcgggtcagtgaagagatggg
agtgcgtctgggagaggaggtgggctatgctatccgctttgaggactgcacatctgagaa
cacagtgatcaaatacatgacagatgggatccttctccgtgagtcactgcgggaggccga
tctggacaactatagtgctatcatcatggatgaggcacatgagcgctcgctcaatacgga
cgtgctcttcggcctgcttcgggaggtggtggcccgacgctcggacctgaagcttgttgt
cacttcagccaccatggatgcagacaagtttgcctccttctttgggaacgttcctatttt
ccacattcctgggcgcactttccctgttgatattctcttcagcaagaccccacaagagga
ttatgtggaggctgcagtgaaacaagccctgcaggtccatttgtctggtgctcctggaga
catcctcgtcttcatgcctggtcaggaggacatagaggtgacctcagagcaaattgtgga
gcaccttgaggagttggagaaggcacctgctcttgctgtactgcctatctattctcagct
gccatcagacttgcaggccaagatattccagaaggctccagatggggtcaggaagtgcat
tgttgccactaacattgcagagacctcactgacagtggatggcatcatgtttgtgattga
ctctggctactgcaagttgaaggttttcaacccccgtataggcatggatgcgctgcagat
ttaccccatcagtcaagccaatgccaaccagagggcgggccgagctggccgaacaggccc
aggccactgcttcaggctctacactcagagcgcctacaagaatgagctgctgaccaccac
ggtgcccgagatccagcgcaccaaccttgccaatgtagtgcttttgctcaagtccctggg
tgtgcaggacctgctgcagttccacttcatggacccaccccctgaggacaacatgctgaa
ctccatgtaccagctatggatcctgggagccctggataacacaggtggtctgacctcaac
aggacgtctcatggtggagttcccactggatcctgcactctccaaaatgctcattgtctc
ttgcgacatgggttgcagctctgagatcttgctcattgtctccatgttgtctgtgcctgc
catcttttatcggcctaagggccgagaggaggagagtgaccaagtgcgggagaaatttgc
tgttccagagagtgatcacttgacttatctgaacgtttacgtgcagtggaagaacaacag
ctattccacgctgtggtgcaaccagcacttcatccatgccaaggccatgcggaaggtgcg
ggaggtgcgtgctcagctcaaggacattatggtgcagcagcggatgagtctagcatcctg
cgggtctgactgggatattgtcaggaagtgcatctgtgctgcgtatttccatcaagccgc
aaagctgaagggcattggggagtatgtgaacatccgcacgggcatgccctgccacctgca
ccccacgagctctctgttcggcatgggctacacaccagactacattgtgtatcacgagct
ggtcatgaccaccaaggaatacatgcagtgtgtcactgccgtggatggagagtggctggc
agagctgggccccatgttctacagtatcaaacatgctggcaagtcacgccaggagaaccg
ccgccgtgccaaggaggaagtgtctgccatggaggaagagatggctttggctgaggagca
gctgcgtgcgcgccgcgaggagcaggagcgccgtaacccaatgggcagttcaagatccac
taaaatctacactcctgggcggaaggagcagggggaacccctgacgccgcgacacacccc
agcccgctttggcctctga
DBGET
integrated database retrieval system
