Cupriavidus sp. KK10: KB879_16965
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Entry
KB879_16965 CDS
T08941
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cuk
Cupriavidus sp. KK10
Pathway
cuk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cuk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KB879_16965 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cuk03400
]
KB879_16965 (ligD)
Enzymes [BR:
cuk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KB879_16965 (ligD)
DNA repair and recombination proteins [BR:
cuk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KB879_16965 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QUN25889
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All DBs
Position
3618655..3621393
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AA seq
912 aa
AA seq
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MAKTTRPTAPQDPGKRRALAKGAGKHTGKRASTARPAARGAPAAKAPAALDKYRRMRDFG
ATPEPAGGAARTRGQPRTRASELSFVIQKHAARRLHYDFRLELGGTLKSWAVPKGPSLDP
ADKRMAIHVEDHPLDYAGFEGVIPAGHYGAGTVIVWDRGTWLPVGDAEAGYRAGKLKFEL
RGEKLHGHWTLVRMHGSRQKEQDAWLLIKERDETAVPASEFDVVEALPDSVLGGTQRKPA
AKRAKTAQPPDEAAPDARSTARSLKPPRGAPRAALPLALAPQLATLVEQPPSDAQAWHYE
IKFDGYRLLARIDGKDVRLFTRQGHDWTSKLRALARDVGTLGLPDGWLDGEIVVLDKHGA
TDFQALQNAFDTARVEAIQYFVFDLPYFAGHDLRKVPLVERRALLRRIFAHNTSPRLQFS
EDFEASPADMLEAACRMKLEGVIGKRADASYVSARTNTWIKLKCTLRQEFVVAGFTDPKG
SRAGIGSLLLGVHDSGGRLRYAGNVGTGFDTRTLAALRTQLDALRTDSAPFESVPAGVKG
HWVRPKLVAEVSFGSWTREGRVRHAVFHGLRTDKPARAVSVERPATPAAKGKPAPKAAKH
TGTQPKAGTAAKRATAAGGKVAISHAGRVIDTASGLTKGDLVRYYERAAPLMLPHLRGRP
IAMVRAPSGVGGEQFFQRHGDTLRVDGLNVLDPGLWPGHPALLEIASAEALVSAAQLNVV
EFHTWNASKRSIDRPNRIVFDLDPGEGVPWAQMQEAATLMKALLDELGLASFLKTSGGKG
LHVVVPITPRAGWDEVKAFAHDVVRHVAKTIPQRFVAKSGPRNRVGKIFIDYLRNGVGAT
TAAAFSARARPGLGVSMPVWWEELDTLQGAAQWTVANAGPRLDTLAADDPWADYADTRQA
ITRAAARLARTG
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggccaagaccacgcgaccgacagcgccacaggatccaggcaaacgccgcgccttagca
aaaggcgccggcaagcatacgggcaagcgcgccagcacggcgcgcccggcggcacgcggc
gcgccagccgccaaggcccccgccgcactcgataaataccgccgcatgcgcgacttcggc
gccacgccggagcccgccggcggcgccgcgcgcacccgcggccagccgcgcacgcgcgcc
agcgaactgtccttcgtgatccagaagcacgcggcgcgtcggctgcactatgactttcgc
cttgagcttggcggcacgctgaaaagctgggccgtgcccaagggcccgagcctggaccct
gccgacaagcgcatggccatccatgtcgaggaccacccgctggactacgccggcttcgag
ggcgtgatcccggccggccactacggtgccggcacggtcatcgtctgggaccgcggcacc
tggttgccggtgggcgatgccgaggccggctaccgcgccggcaagctgaagttcgagctg
cgcggtgaaaagctgcacggccactggaccctggtgcgcatgcacggcagccggcagaag
gagcaggacgcctggctgctgatcaaggagcgcgacgagaccgccgtgccggcatcggag
ttcgacgtggtcgaggccttgccggacagcgtgctgggcggcacgcagcgcaagcctgcg
gcaaagcgcgcaaagaccgcccagccgcctgacgaagccgcaccagatgcgcgcagcacg
gcgaggtccctgaagccgccgcgcggcgcgccgcgcgcggccttgccgctggcgctggcg
ccgcagctggccacgctggtggaacagcctccgtcggacgcgcaggcctggcattacgag
atcaagttcgacggctaccggctactggcccgcatcgacggcaaggatgtgcgcctgttc
acgcgccagggccacgactggaccagcaagctgcgtgcgctggcgcgcgacgtcggcacc
ctgggcctgcccgacggctggctcgatggcgagatcgtggtgctcgacaagcatggcgcg
accgacttccaggcgctgcagaacgccttcgataccgcgcgcgtcgaggccatccagtac
ttcgtgttcgacctgccctactttgccggccatgacctgcgcaaggtgccgctggtggag
cgccgcgccctgctgcgccggatcttcgcgcacaacacctcgccgcgcctgcagttcagc
gaggacttcgaggccagccctgccgacatgctagaggcagcctgccgcatgaagcttgaa
ggcgtgatcggcaagcgcgccgacgccagctatgtcagcgcgcgcaccaatacgtggatc
aagctgaaatgcaccttgcgccaggagttcgtggtggcgggtttcaccgacccgaagggc
agtcgcgccggcatcggctcattgctgcttggcgtgcacgacagcggcgggcggctgcgc
tacgcgggcaatgtcggcaccggcttcgacacgcgcaccctggctgcgctgcgcacgcaa
ctggacgcgttgcgcaccgattccgcgccttttgagagcgtgccggcaggcgtgaaaggg
cactgggtgcggccaaagctggtggccgaagtctcgttcggcagctggacccgcgaaggc
cgcgtgcgccatgccgtcttccacggcctgcgcaccgacaagcccgcgcgcgcggtgtcg
gtggagcggccggcaacgccggcagccaagggcaagccggcgccaaaagcggcaaagcac
accgggacacagccgaaggccggcaccgccgcaaagcgtgcaaccgccgccggcggcaaa
gtcgcgatcagccatgccgggcgcgtcatcgacacagcatccggcctgaccaagggcgac
ctggtgcgctactacgaacgcgccgcaccactgatgttgccgcacctgcgcgggcgtccg
atcgcgatggtgcgcgcgccgtcgggcgtgggcggcgagcagttcttccagcgccatggc
gacacgctgcgggtggacggcctcaacgtgcttgatccgggcctgtggcccgggcatccc
gcgctgctggaaatcgcgtcagccgaagcgctggtgtccgcggcacagctcaacgtggtg
gagttccacacctggaacgccagcaaacgcagcatcgaccgccccaaccggatcgtcttc
gacctggacccgggcgaaggcgtgccctgggcacaaatgcaggaagccgccacgctgatg
aaggcgctgctcgatgaactcggcctcgccagcttcctgaagaccagcggcggcaagggg
ctgcacgtggtggtgccgatcacgccgcgcgcgggctgggacgaggtgaaggcgttcgcg
catgacgtggtgcgccatgtcgccaagaccattccgcagcgcttcgtggccaagagcggg
ccacgcaaccgcgttggcaagattttcatcgattacctgcgcaatggcgtcggtgccacc
acagcggcggcattctcggcgcgggcacgcccggggctgggcgtgtcgatgccggtgtgg
tgggaagaactcgataccctgcaaggcgcggcgcagtggaccgtcgccaatgcgggccca
aggctcgacaccctggccgccgacgacccatgggcggactacgccgacacccggcaggcg
atcacgcgcgccgctgcgcgactggctcgcaccggctag
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