Cupriavidus sp. USMAA2-4: BKK79_16695
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Entry
BKK79_16695 CDS
T05072
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cuu
Cupriavidus sp. USMAA2-4
Pathway
cuu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cuu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BKK79_16695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cuu03021
]
BKK79_16695
Transcription machinery [BR:
cuu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BKK79_16695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Ribosomal_60s
GerE
SPO22
Motif
Other DBs
NCBI-ProteinID:
AOY93256
UniProt:
A0A1D9H057
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All DBs
Position
1:3753002..3755236
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AA seq
744 aa
AA seq
DB search
MRGKSITVAKQQNPEVETKRTAAAATKATQAKVGAASTAPAASERPAAAEPKKRGRKPKA
EMQHDDSTTDDVSEEFYEDEMRAAAPAAAPKTEKQKAKDRKAKEKALLKEFASTQQGTEE
ELEARRQKLKALIKLGKSRGYLTYAEINDHLPDDMVDSETIDTLVATLNDIGIAVYEQAP
DAETLLLNDNAPSATSEEEAEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGE
IEIAKRIEAGLKDMVMAISACPVTISEILAQAERVANDEIKIDEFVDGLIDPNADAVAEA
AAQGGTAADEEELEEEEAEEDEEEDEDDDAGGAGASARQLEELKLAAMEKFRVIAEQFDK
MRRAFEKEGYKSKPYVKAQEAIQAELMGIRFTARNVERLCDTLRGQVDEVRKLERAILNI
VVDKCGMPRADFVARFPGNETNLEWIGGVIADGKAYSGIVERNVPAVHELQQKLIDLQAR
VVLPLKELKDVNRKMSEGEKRAREAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNI
GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQI
LQETGNEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTNTLA
PAEAALHGSMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQI
EAKALRKLRHPSRSDKLKSFLEGN
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
gtgagaggcaagagtatcaccgtggcgaaacagcagaatcccgaagtcgagaccaagcgt
acggcggccgccgcaaccaaggccacgcaggccaaggtgggtgccgcttccaccgccccc
gctgcatccgagcgccccgccgctgcggaacccaagaagcgcggccgcaagcccaaggcc
gagatgcagcacgacgacagcaccacagacgacgtgagcgaagagttttacgaagacgag
atgcgcgcagcggctcctgccgcggcgccgaagaccgaaaagcagaaggccaaggaccgc
aaggccaaggaaaaggcgctgctgaaggaattcgcctcgacccagcaaggcacggaggaa
gagctcgaggcgcgccgccagaagctcaaggctctgatcaagctgggcaagtcgcgcggc
tacctgacctatgcggagatcaacgatcacctgccggacgacatggtcgattcggaaacg
atcgacacgctggtcgccacgctgaatgacatcggcatcgccgtctacgaacaggctccg
gacgccgagacgctgctgctcaacgacaacgcgccgtcggccaccagcgaggaagaggcc
gaggaagaagccgaggccgcgctgtccaccgtcgattccgagttcggccgcaccaccgac
cccgtgcgcatgtacatgcgcgagatgggcacggtcgagctgctgacgcgcgagggcgag
atcgagatcgccaaacgcatcgaggccggcctgaaagacatggtgatggccatctccgcc
tgcccggtcacgatctccgagatcctggcccaggccgagcgcgtcgccaacgacgagatc
aagatcgacgagttcgtcgacggcctgatcgatccgaacgccgatgccgtcgccgaggct
gccgcccagggcggtactgccgccgacgaagaggagctcgaagaggaagaggccgaagag
gacgaggaagaggacgaagacgacgacgccggcggcgccggtgcgtcggcgcgccagctg
gaagagctcaagctggccgcgatggagaagttccgcgtcatcgccgagcagttcgacaag
atgcgccgcgccttcgaaaaggagggctacaagtccaagccctatgtgaaggcgcaggag
gccatccaggccgagctgatgggcatccgcttcaccgcgcgcaacgtcgagcgcctgtgc
gacacgctgcgcggccaggtggacgaagtgcgcaagctcgagcgcgcgatcctgaacatc
gtggtcgacaagtgcggcatgccgcgcgcggatttcgtcgcccgcttcccgggcaacgag
accaacctcgagtggatcggcggcgtgatcgccgacggcaaggcctacagcggcatcgtc
gagcgcaatgtgccggccgtgcacgaactgcagcagaagctgatcgacctgcaggcccgc
gtggtcctgccgctgaaggaactgaaggacgtcaaccgcaagatgtccgaaggcgagaag
cgcgcgcgcgaagccaagcgcgagatgaccgaggccaacctgcgcctggtgatctccatc
gccaagaagtacaccaaccgcggcctgcagttcctcgacctgatccaggaaggcaatatc
ggcctgatgaaggcggtggacaagttcgaatatcgccgcggctacaagttctcgacctac
gccacgtggtggatccgccaggccatcacgcgctcgatcgccgaccaggcgcgcaccatc
cgcatcccggtgcacatgatcgagaccatcaacaagatgaaccgcatctcgcgccagatc
ctgcaggagaccggcaacgagccggatccggcgacgctggccgagaagatggagatgccc
gaggacaagatccgcaagatcatgaagatcgccaaggagccgatctccatggaaacgccg
atcggtgacgacgacgactcccatctgggcgacttcatcgaggacaccaacacgctggcc
ccggccgaagccgcgctgcacggttcgatgcgcgacgtggtcaaggacgtgctggattcg
ctgacgccgcgcgaagccaaggtgctgcgcatgcgcttcggcatcgagatgagcaccgac
catacgctggaagaggtcggcaagcagttcgacgtgacgcgcgaacggatccgccagatc
gaggccaaggcgctgcgcaagctgcgccatccgagccgctccgacaagctgaagagcttc
ctggaaggcaactga
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