Cyprinodon variegatus (sheepshead minnow): 107092354
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Entry
107092354 CDS
T06110
Symbol
lama4
Name
(RefSeq) laminin subunit alpha-4
KO
K06241
laminin, alpha 4
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04510
Focal adhesion
cvg04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107092354 (lama4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107092354 (lama4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Laminin_G_2
Laminin_G_1
Laminin_EGF
Laminin_II
Laminin_I
Laminin_G_3
HSA
JAG1-like_EGF2
Motif
Other DBs
NCBI-GeneID:
107092354
NCBI-ProteinID:
XP_015242277
Ensembl:
ENSCVAG00000000118
LinkDB
All DBs
Position
Unknown
AA seq
1843 aa
AA seq
DB search
MATKSLSLLCVVSILSGIVCTTSATRFGEQQLTVLQVCAKGYFLSEQSVCLPCNCKGHAD
YCNDITGVCINCRNHSTGDFCEMCEDGYILSSSQDGQHACIPCSCPLPTESNNFAVYCKK
GVGSLQCKCKQGYAGNHCERCAPGYYGNPMLIGSSCKRCDCNGNTDPNLIFNECHNMTGR
CQHCWGNTAGDNCERCAPGFYGDAISAKNCKECKCNKCGTSSCDDRTGVCHCKPGVKGRF
CDQCEEGYFGFSSCQGCRRCECGPASLRSTCHPLTHSCSCRPGAGGRYCERCLPGYWDYS
PSGCQKCDCESGHCNMHTGECLAEAAVNLCNNSCDDCIWQLIGDLRLSNKTLDQLKVGVL
NISTGAAANDRIKYYNYTAHQLQRHFHVWRNKSSVIRRRTEELDEAADNVLLDMKDLRDQ
GNLVKRLGNQLDTESMETLTLAEQLSNNLTDLSQRIEDMIHDWELYNIQQDMDPEEVRRS
TEMAQEMISWIRQLDLSTQEPIARNEATKAHELLARIRQMEKKLMITENRLPSIREILSR
FSSRLSEAEKFLLDAAGTVQEAEDKNKASLLKFQRKEEKQQRLTEDQLAVNDTLETSRVF
ISEAERTVAEVDALTQSVRGYHAEIDGADQRLTEKMERLSLADRDLVQKADDHAAELETQ
ANELEEDLKESDANGFVQRAISAANVYNNIVKYIDDANITSLTTLNSSQRAEDAIGGIKT
QLDYLVTQSENTFLKSVSLRSEQHDVLTQVADGVAYIEETRLANKNIQEKLEEVAKDIRV
IQKDRTPQRLNFSLEVAEETLIRSTEVLKTITPISERVQQWSQNMRNSEYSTAAYEKAVL
SAGEAVENLNVLVPELLDKLKVVEEKKPVNNVTTNIMRIRELIAQARSVAKKVQVSVKFN
GQSSVEVQPPSNLEELKTSTSISLFMRVDPDKDPIEDRFILYLGDRNGKKDYMGLAIKND
KLVFVYNLGRDDVEIPLSSKPVSQWPAVFNYIKIERLGRHGKIYLTIPSQGSTDEQKFIQ
KGNAPITDSLFDIDPKNVAFFIGGAPPDVKLPPPLTLAPFVGCIELASINNDVISLYNFK
ETHLKNVSPPCPRYKLAFSQSRIASYLFDGTGYALISNIERRAKFGPVIRFDISVRTVTD
NCAIFLMVSGENFFLLEIKNGFPRLTYDFGFSDGPKLLDTNLPKFQINDAKYHEVSVIYH
QLKKVILLVDKALVKTVENPRTPLPFSEIYIGGAPSSLLKSRAELSAVVGLKGCVKGFMF
QKRDFNLLEEPGTIGISSGCPEESVVSTQLTHLHEHIYFNFMQPEEFSIALENGAVVLNN
RGVKVKLQKKQYNDGRTHFLLASVNKERYSLLLDDKDKQEKKRPASAMKSSSDSPVKTFY
YGGSPSSSLRNFTGCISHAYINRQDRDIEAEDFQKYTEKVNVSLQDCPAQQPPAALMSPH
RATSKAKQSQKVARDKSSHLLEPTSSDQKSPEPSIQSCYLSPSPRSTHQAFSYGGVANSR
QHYAGVPASLPERCHLSLSLKIQSASGLIFYVSDEQEDNFMALFLVEGKLVFSFNVGDQK
VQIRTEKRYDDGVWHSVACIRDGKTGRLVMDRHTVFEDRAQADNVVWKVSDFLFVGGVPP
GRAQRNIKRNSAHSFTGCMKNLQLDGRHLSSAAETFGVSPCFEGLKEDGTYFSEEGGYVV
MDESFELGLRFELVMEVRPRVASAVLLHVRVAEGYFIMYIHQGAVVVVVNDGTHEFSTKV
SPRQGVCDGTWHSITVIRDANVLQLDVDSEIQHVVGPVNPRSADTKRPVFIGGAPDLFLP
ESVATRRPYVGCMKNLTINKNPVSFSKAVLVSGAVGVGSCPAA
NT seq
5532 nt
NT seq
+upstream
nt +downstream
nt
atggctactaaatccctgtccttgctctgcgttgtctccatcctctcagggattgtttgc
acaacttctgccaccaggtttggggagcagcaactcactgtacttcaagtgtgtgccaag
ggttatttcctcagtgaacaaagcgtatgccttccatgtaactgtaagggccacgctgac
tactgcaatgacatcactggtgtttgcattaactgcaggaaccacagcacaggagatttt
tgtgaaatgtgtgaagatggctacatcctgagctccagtcaggatgggcaacatgcctgt
ataccctgttcctgccccctccctaccgaatctaacaactttgctgtgtactgcaaaaaa
ggagtcggcagtctgcagtgcaagtgcaaacagggctacgctggaaatcactgtgagagg
tgtgctccaggttactatggaaacccaatgcttatcggttcatcctgtaagaggtgtgac
tgtaacggcaacactgaccctaacctaatctttaacgagtgccacaacatgacaggacgc
tgccagcactgctggggaaacacagctggtgacaactgtgagaggtgcgcccctggtttc
tacggcgacgccatcagcgccaagaactgcaaagagtgcaagtgcaacaaatgcggcacc
tcctcatgtgacgacaggacaggggtgtgtcactgcaagccaggagtcaaaggacgcttc
tgtgaccaatgtgaggagggttactttggattctccagctgtcagggctgcaggaggtgt
gaatgtgggccagcgtcccttcgttcaacctgccatccacttactcacagctgttcttgc
cgcccgggggctggaggtcgttactgtgagcgctgcctcccagggtactgggattacagt
ccctccggctgccagaagtgtgactgtgagagcggccactgtaacatgcatacaggagaa
tgcctggcagaggctgcagtcaatctctgcaacaacagttgtgatgactgcatctggcag
ctgattggagatttaaggttgtctaataagaccctggatcagctgaaggtcggagtgctg
aacatctccactggtgctgcggctaacgacaggatcaaatactacaactataccgctcat
caactccagaggcactttcatgtctggagaaacaagtcatctgtgataagacgacggact
gaagagctggatgaggctgcagacaacgtgcttttggacatgaaagacctcagagaccag
ggaaacctggtgaagagattagggaatcagctggacacagagtccatggagacgttgacc
ttggctgagcagctcagcaataatctcacagacctcagccagcgtatcgaagatatgatc
catgactgggaactgtacaatatccagcaggatatggatccagaggaggtcagacgtagc
acagagatggcccaagagatgatatcgtggatcagacagctggacttgtccacacaggag
cccattgccaggaatgaagcaacaaaggcccatgaattgctggcgcgtattcgccaaatg
gagaagaagctgatgatcacagagaaccgcctgccttcaatcagagagatcctgtcccgt
ttctccagtcgactctcggaggctgagaaatttctccttgatgcagctggaactgtgcag
gaagcagaggacaagaacaaagccagcctgctcaagttccaaaggaaggaggaaaaacag
cagaggctgacggaggaccagctggctgtaaacgacaccctggagacgagcagagttttc
atctctgaagctgagaggaccgtagctgaggtggacgctttgacacagagtgtgagagga
taccacgctgagatagacggcgccgatcagaggctgacagagaaaatggagcgtctctcg
ctggcggacagagatctggttcagaaggcggacgatcatgctgctgagctggaaacacaa
gccaatgagttggaggaggatctgaaagaaagcgatgccaatggcttcgttcagagagcg
ataagcgccgccaatgtttacaacaacatagtgaaatatatcgatgatgccaacatcact
tcactcactacgctcaactcttctcagagagcagaagatgccatcggtgggattaaaacc
cagcttgattacctggtgacacagagtgaaaatacgttcctgaaatctgtttcattacga
tctgaacagcatgatgtgctgacccaagtggccgacggtgtggcatacatcgaggaaacc
cggcttgctaataagaacattcaggaaaaactggaagaggtggcgaaagacatcagggtt
attcagaaggacagaaccccccagcgcctgaacttctccttggaggtggcagaggagact
ctcatccgctccacagaagtcctgaagaccatcactcccatcagcgaacgagtgcagcag
tggtctcaaaacatgagaaacagcgagtactctacagctgcatatgaaaaggccgttttg
tctgctggagaagcagtggagaacctgaacgtgctcgtccctgagttgctggacaagctg
aaggtggttgaagagaagaagcctgtcaacaacgtgaccactaacatcatgaggatcaga
gaactcattgcacaagccaggagcgtggccaagaaagttcaggtttctgtgaagtttaat
ggacagtcttcagtggaggttcagccacccagcaacctggaggagctgaagacgtcgaca
tccatcagcctgttcatgagggtggacccagacaaagaccccatagaggaccgcttcatc
ctctatctgggggacaggaatggcaagaaggactacatgggcctggccatcaagaacgac
aagctggtgtttgtctacaacctgggacgtgacgacgttgaaatcccgctgtcctccaag
cctgtcagtcagtggccggcggtctttaactatatcaaaatagaaaggctgggacgacat
ggaaaaatctacctgactattcccagtcagggatccacagatgagcagaaattcatccag
aaaggcaacgctcccatcaccgactccctgttcgacatcgaccccaagaatgtggcgttc
ttcatcggaggtgcccccccagacgtcaagctgcctcctcctctgactctcgctcctttc
gtgggctgcatcgagctggcttctatcaacaacgatgtcatcagcctgtacaactttaaa
gagactcacctaaaaaatgtctcacctccttgtcccaggtacaagctggccttctcccag
agtcgcatcgccagctacctgtttgacggaacgggctatgcactcatcagcaacatcgag
agaagagcgaagtttggtcccgtcatacgctttgatatttctgtgcgaacagtcacagac
aactgtgccattttcctcatggtcagcggggaaaactttttcctcttagaaataaagaat
ggtttcccgcgcctaacctacgactttggcttcagcgatggaccaaagcttctggacacc
aatttaccgaaatttcaaataaatgatgcaaaatatcatgaggtgtcagtgatctaccat
cagctaaagaaagttatcctgctagtggacaaggctttagttaaaactgtggagaatccc
agaaccccgctgcctttctcagagatctacatcgggggtgccccctccagcttgctaaaa
tccagggcggagctgtctgctgtggttggcctgaaaggctgcgtcaaaggattcatgttc
cagaaaagagattttaacctgttggaagagcctggaaccattggtattagcagcggttgc
ccagaggagtctgttgtaagcacacaactcacacacctacatgagcacatatattttaat
tttatgcaaccagaggagttcagcatcgccctggagaatggagcagtagtactgaacaac
cgaggagtgaaggtcaaattacagaagaagcaatacaatgatgggaggactcacttctta
ctggcctcagtgaacaaggagaggtattcactgttgctggatgacaaagacaagcaggag
aaaaagcgtccggcgtctgccatgaagtcctcctcagattctcccgtaaagaccttctac
tacggcgggtctccaagcagcagcctgaggaacttcaccggctgcatcagccatgcgtac
atcaacagacaagaccgagacattgaggcggaggacttccagaagtacacagagaaggtg
aacgtttctctgcaggactgtccggcacagcagcctcctgctgcgctgatgtcaccacac
cgtgcaacgtctaaagccaaacagagccagaaggttgccagagataagtccagtcatctt
ctggagccgaccagctctgatcaaaagtcaccagagcccagcatccagtcttgctacctc
tccccaagtcctagatcaacacaccaggccttcagctatggcggagttgccaacagcagg
cagcactacgcaggtgtccctgcttctcttcctgagaggtgccacttgtccctgtcccta
aagatccaatctgcctcaggcctcatcttctatgtatccgatgagcaagaggacaacttc
atggctcttttcctggtggagggaaagcttgtgtttagtttcaatgtaggagaccagaag
gttcaaattcggacagagaagagatacgacgatggcgtctggcacagtgttgcttgcatc
cgggatgggaagacggggcggctagtgatggacagacacacggtgtttgaagacagagct
caggcagacaatgttgtctggaaagtcagtgacttcctctttgttggaggagttcctcct
gggagagcacaaaggaacattaagaggaactctgcacacagctttaccggctgcatgaag
aaccttcagctggatggacgacacctgtcctctgcagctgagacttttggggtcagcccg
tgctttgaaggactaaaggaagacggaacgtacttttcagaggagggaggatatgtggtt
atggatgaatccttcgagctgggcctgaggttcgagttagtgatggaagtgcgaccgcgt
gtggcgtcagccgtgctacttcacgtgcgggttgcagagggttatttcatcatgtacatt
catcaaggagcggtggtcgttgttgtcaacgacggcacacatgagttctctactaaagta
tcaccaaggcagggcgtgtgtgacggcacctggcacagtatcacagtgatccgggatgcc
aatgtgcttcagctggatgtggactctgagatccaacacgtcgtaggacccgtaaacccc
cgttctgcagacacaaagaggcccgtatttattggaggagctccagatctcttcctccca
gaaagcgtggccaccaggaggccctatgtgggctgcatgaagaacctgaccatcaacaag
aacccagtgagcttcagcaaggcggttctggtcagcggcgctgtcggcgttggaagctgt
cctgcagcataa
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integrated database retrieval system
