Cyprinodon variegatus (sheepshead minnow): 107096343
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Entry
107096343 CDS
T06110
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04510
Focal adhesion
cvg04512
ECM-receptor interaction
cvg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107096343
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107096343
09142 Cell motility
04820 Cytoskeleton in muscle cells
107096343
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cvg04147
]
107096343
00536 Glycosaminoglycan binding proteins [BR:
cvg00536
]
107096343
Exosome [BR:
cvg04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
107096343
Glycosaminoglycan binding proteins [BR:
cvg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107096343
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
107096343
NCBI-ProteinID:
XP_015248439
LinkDB
All DBs
Position
Unknown
AA seq
1706 aa
AA seq
DB search
MAGSAGSGHHRPLRWQALPAAATIGLSDGRLCRQRPPSASPMLKEVEPFTRHINSVDHNI
KFTREDANDNKLPFLDCLACHCTGKSLCHCDGVKGQKGEPGYIGDPGLPGVTGFPGNEGS
QGSPGEKGNRGRAGSPGIKGSLGIRGRPGLPGIPGLPGLPGHEGQTGRPGNPGCNGTKGE
EGYPGYPGNAGPRGPRGPQGPRGMKGDSATYPTQRQIKGATGPQGQKGRTGENGRRGETG
RSGPPGPIGRPGKPGLPGVQGEKGQQGSSPTSPRGQKGDPGPPGIPGKQGIKLYAEGPKE
LKGVPGEIGPKGFPGLPGLPGKPGIKGEKGDKGEPGPLGKKGKNGLPGEVGLKGDKGDAG
LIGPPGIDGALGLKGNRGPPGPPGEIRHNHSFLKGQPGVPGPPGPKGLPGSQGPTGPPGV
MGESGMAISGPPGFRGSPGSPGPKGEPGVPGPVVRGPPGPTGIPGAPGAKGEQGEPGILN
YQPGRTGPPGEKGERGLPGPRGKSGEKGQKGEICTVCVTKSCPPGLQGPPGQEGKSGTPG
PQGCRGPAGDKGFKGVPGPPGPRGSIGLPGRLGLPGPTGDLGIITRLGQKGEDGDKGNPG
PPGQQGRDGSNGAPGPKGVQGPQGNPSPPGPKGDRGPIGNTGPQGPQGQMGPTGEPGIGA
PGPPGSKGDSGLLGKPGEPGPQGEKGSPGQIFPVQGDPGQKGKRGFLGIPGDEGIRGPRG
LQGDAGPKGEKGLTGVSQCGTPGKPGSKGDKGSKGGQGKPSFGIKGREGPRGPPGPNGVK
GNKGIGVPGEQGQEGSQGEDGCVGPPGAPGPPGPEGAQGPPGEDGPQGPKGNYGLKGLPG
PTGVPGLCYPGAPGPRGVQGPEGLIGLKGNTGPRGQKGDPGIDTFGFPGPRGPRGTPGSD
GPPGPVGAVGRKGLKGRSGDPGSPGIRGEMGLPGQSGSPGPDGKPGNYGEPGPTGDRGAD
GLKGFQGPPGGPGDKGDTGPKGFPTTTTVPGYPGDMGLPGPRGRTGEIGERGPSGPPGSD
GLEGSSGSQGPPGLPGDPGRDGERGPPGVTGPPGDKGFIGNPGCKGGKGAKGTCGAPGRN
GTPGRNGAKGPKGEPSLAGPGPKGYPGAKGNPGSQGLPGPEGPQGASGDCGSPGRCGLCG
PKGSPGPTGYRGPPGKEGEKGFDGPRGKFGPPGQPGPPGYKGPPGNPGPPGPKGSQGQDG
IPGPDGEKGSMGSCTPGPKGRKGEAGPTGSTGNRGSPGPYGPSGPVGPPGNPGFPGFPGP
PGPPGSAGESGSCINGIKGNKGCPGSKGPKGPPGSKGPPGPPGPGYKGQKGLKGQPGPPG
PPGPSGHPGPGGNPGTCGPPGPPGIKGNPGPAGEKGPRGMEGTEGLPGNPGKDGFPGLQG
RQGQRGIDERPIVRAIPGDQGEMGDPGFDGRRGPPGCKGAMGRDGLKGRAGEKGQKGQPG
LPGLRGEDGDDGAIGAKGEDGERGRTGFKGLPGPPGGVRPGMNGFLFTRHSQGRFIPECP
SGSSFIFDGYSLLFINGYSRAHGQDLGTVGSCLPRFSTLPFLICEIAGECQYAERNDYSY
WLSNVRDPQTNREEDSLQFKISRCSVCEAKANVIAVHSQTSYVPRCPSNWVSLWEGYSFV
METGLGAEGSGQPLVSPGSCLENFHRMPFIECNGNPGTCKYDSGHYSYWLAALNQGNMFG
KPRGWTIPGDTHRNKISRCRVCMKQI
NT seq
5121 nt
NT seq
+upstream
nt +downstream
nt
atggcaggctctgccggcagcggccaccatcggcctctccgatggcaggctctgccggca
gcggccaccatcggcctctccgatggcaggctctgccggcagcggccaccatcggcctct
ccgatgctaaaagaagtggaacctttcacaagacacattaactcagtggaccacaacatc
aagttcaccagagaagatgccaacgacaacaagctaccttttctggactgcttggcctgt
cactgcaccgggaagtctctctgccactgtgatggggtcaagggtcagaagggagaacct
ggatacattggagaccctggacttccaggagtaaccggatttcctggaaacgaaggcagt
cagggctcgcctggagaaaagggtaatcgaggaagagcagggagtccaggaataaaaggc
tctctgggtattagaggaagaccaggtttaccaggcattccaggacttccaggtctccct
gggcatgaaggacaaaccggccgacctggaaacccaggatgcaatgggacaaaaggggag
gagggttacccaggttatccaggaaatgcgggaccacgcggaccaagaggaccccaggga
ccaagagggatgaagggagactcagctacataccccactcagcgacaaataaaaggagca
acaggacctcaagggcaaaagggaagaacgggagaaaatggaagaagaggagaaacaggc
cgatcaggaccaccaggacccattggacgtcctggaaaacctggactgcccggagttcaa
ggtgaaaagggtcaacaagggtccagtccgacgagcccacgaggacaaaagggtgatcct
ggacctccagggatccctggaaagcagggaataaaactgtatgctgaaggacccaaagag
ctgaagggagtaccaggtgaaataggaccgaaaggttttcctggacttcctggtctgcca
gggaaacctgggattaaaggagagaagggcgataagggagaacctggacctcttggtaaa
aaagggaagaatggattaccaggagaagttggactaaagggagataaaggagatgctggc
cttatcggtcctcctggtattgatggtgccttggggttaaagggcaatcgagggcctcca
ggtcccccaggagaaatcagacacaaccactcatttctgaaaggccagcctggtgtccct
ggcccccccgggcccaaaggattgcctgggtctcaaggaccgactggtcctcctggagtg
atgggcgagtcaggtatggctatcagtggaccaccaggcttcagaggatcacctggctca
cctggtcctaaaggagaaccaggagtgccagggccagtggttagaggaccacctggacca
accggaatcccaggagctcctggagctaaaggagagcaaggagaacccggaatattgaac
tatcagccaggaagaaccggtcctccaggagaaaaaggggaaagaggacttcctggaccg
agaggaaagagtggggagaagggtcaaaaaggggagatttgtacagtttgtgtgaccaag
tcttgccctcctggacttcagggaccaccaggccaggagggtaaaagtgggacaccaggt
ccacaaggttgtagagggcctgcgggtgataaaggtttcaaaggtgttccagggccacct
ggaccacggggttccattggtttgcctggccgtctagggctcccgggaccaacaggtgat
ttaggtatcattactagactggggcagaagggcgaagatggggacaaggggaatcctggg
ccaccaggacaacaagggagggatggatctaatggagcaccaggcccaaagggtgttcaa
ggaccgcaggggaatcctagtccaccagggccaaaaggtgacaggggcccaattggcaac
actggtccccaaggaccgcaaggccagatggggcctacaggagagcctggtattggggct
ccagggcctccaggatctaaaggagatagcgggttactgggaaagcctggagaaccgggg
cctcaaggagaaaagggttctccagggcaaatatttccagttcaaggagatccaggccag
aaaggaaagagaggatttcttgggatccctggagacgaaggtataagaggacctcgaggc
cttcaaggtgatgcgggtcctaagggggaaaaggggctgacaggtgtttctcagtgcggt
accccaggaaaaccagggtcaaagggagacaagggttccaaaggaggacagggtaaaccc
agttttggaatcaagggacgagaggggccacgaggccccccagggcccaatggcgtgaag
gggaacaaaggtataggtgtacctggggagcagggtcaggaaggctctcagggagaagat
ggctgtgttggaccaccaggagctcctgggcctccaggtccagagggtgctcagggaccc
ccaggagaagatggtcctcaagggccaaaaggtaactatggcctgaaaggtttacctggt
cctactggagtgcctggactctgttaccctggagctccaggacctcgaggagtgcaaggt
ccagaaggtttaattggattaaaaggaaacacgggaccaaggggtcagaaaggggatcct
gggattgacacatttggattccctgggcctagggggccaagagggacaccaggatctgat
ggaccgccaggtccagtcggagctgtgggaaggaaaggcctgaaagggagaagtggggac
cctgggagcccaggtatcagaggggaaatgggtcttccaggacagtctggaagtccagga
ccggatggtaaaccaggcaattatggggaaccgggaccaacaggtgataggggcgcagat
gggctaaagggttttcaggggcctcctggaggtccaggagataaaggggacaccggacca
aaaggatttccaacaactactactgtaccaggatatcctggggatatgggtttgccaggg
cccaggggtcgtaccggtgaaataggagaaagaggcccctcaggacctccagggtcagat
ggcttagaagggtcatctggatcccaaggaccaccaggacttcctggagatccaggcaga
gacggagagagaggtccacctggtgttactgggcctccaggtgataaagggttcattggg
aatccaggttgcaaggggggaaaaggtgcaaaaggaacttgtggggcccctggtaggaat
ggaacaccaggaagaaatggagcaaaaggtcctaaaggagaaccaagtctagctggacct
ggacctaaaggttatccaggagcaaaggggaatcctggaagtcaaggtcttccaggtcca
gaaggaccacagggagcatctggagattgtggttctccaggacgatgtggactttgtgga
cctaagggatctcctggaccaactggatacagaggtccacctgggaaagaaggtgagaaa
ggttttgatggccctcgtggaaaatttggacctccaggacagcctggacccccaggatac
aagggacctcctggaaatcctggtccacctggacctaaaggaagccagggccaagatggg
atacctggacctgatggagaaaagggatccatgggatcctgtacaccagggcctaaggga
cgaaaaggagaagcaggtccaactggatccacagggaatagggggtcaccaggtccctat
ggcccttccggtccagttggtcctccaggaaacccaggattcccaggttttcctgggccc
cctggtcctcctgggtctgctggagagagtgggtcctgcattaatggaataaagggaaat
aaaggatgccctggatcaaaaggacccaaaggtccacctggctctaaaggtccccctgga
cctccaggtcctggttataagggtcagaaaggattgaaaggacaaccaggtccccctgga
ccccctggaccatctggtcatcctggtcctggaggaaacccaggtacttgtggaccacct
ggacctcctggaataaaaggcaatccaggaccagctggagaaaaaggaccaaggggtatg
gaaggaacagaaggactgcccggtaaccctggcaaagacggatttccaggactacaggga
aggcaaggacaaagagggatagatgaacgtcctattgtgagggcaattcctggagaccaa
ggtgaaatgggagaccccgggttcgatggaagaagaggaccccccggttgcaaaggagct
atgggacgtgatggtttgaaaggcagagctggagaaaaaggtcagaaggggcaacctggt
cttcctgggctgaggggagaagatggagacgatggagcaattggtgccaaaggtgaggac
ggtgagcgtggcagaacagggtttaagggccttcccggtccaccaggtggagtcagacct
gggatgaacggcttcctgttcaccagacacagccagggtcgctttatcccagagtgtccc
tcaggatcctcctttatattcgatggatactccctgttgtttatcaatgggtacagccgc
gcccacggacaggatctaggtacagttggtagttgtctcccgaggttcagcactctaccc
ttcctcatctgtgagattgcgggagaatgtcagtacgcagaacgtaatgactactcctat
tggctctccaatgtcagagaccctcagacaaacagagaagaggattcgctacagtttaaa
atcagcaggtgttccgtttgtgaggccaaagccaacgtgattgctgtccacagtcagacc
agttacgttccaagatgcccctccaactgggtatcactctgggaaggatattccttcgta
atggaaactggtttaggtgctgagggttccggtcagcctctggtttcacctggatcgtgt
ttggagaatttccacaggatgcccttcatcgagtgtaacggaaaccccggaacctgcaag
tatgacagcggacactacagctactggctggctgctctcaaccagggaaacatgtttgga
aagccaagaggttggaccattccaggagacacacacagaaacaaaattagtcgctgtcga
gtctgcatgaagcagatatga
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integrated database retrieval system
