Cyprinodon variegatus (sheepshead minnow): 107097027
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Entry
107097027 CDS
T06110
Symbol
col6a2
Name
(RefSeq) collagen alpha-2(VI) chain
KO
K06238
collagen type VI alpha
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04510
Focal adhesion
cvg04512
ECM-receptor interaction
cvg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107097027 (col6a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107097027 (col6a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
107097027 (col6a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cvg04147
]
107097027 (col6a2)
00536 Glycosaminoglycan binding proteins [BR:
cvg00536
]
107097027 (col6a2)
Exosome [BR:
cvg04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
107097027 (col6a2)
Glycosaminoglycan binding proteins [BR:
cvg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107097027 (col6a2)
Hyaluronan
Extracellular matrix or blood plasma proteins
107097027 (col6a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
Motif
Other DBs
NCBI-GeneID:
107097027
NCBI-ProteinID:
XP_015249477
Ensembl:
ENSCVAG00000015596
UniProt:
A0A3Q2EA41
LinkDB
All DBs
Position
Unknown
AA seq
1011 aa
AA seq
DB search
MMKLEVIVFCLLFGALTHAKKAECNEKRECPIQLYFTIDTSETIAMQEPPPGALVESIKE
FTKRFVDRLKDEEIRGVVKISWQVGGLHYSQNQSVFSRIQSRDEFKKALSTIVYLGKGTY
TDCALRRMREEMLQAPLEHSNNRFAVVITDGHVTGNPCGGIKMSAEAAREKEIKIFSVAA
STLIEETGLTEIASSPASVFRDDFLAVNLSTGRPVIQTTTIDRIIKTMRHMAFVECYNVS
CRETEGPPGPIGYRGQKGAKGDNGEAGIKGERGRPGDPGIEGPIGQPGTKGEPGAKGDKG
EIGSQGKQGVAGLPGRNGTDGQKGKIGRIGSPGCKGDPGDRGPDGHPGDSGEPGPPGTDG
EKGDPGRPGRDGPIGPDGVPGPKGEPGSPGSPGEPGAKGNPGEPGKPGDRGEEGRKGDYG
PKGDPGSDGKKGEKGEMGPEGPRGNPGEKGNKGAKGDFGLPGPRGPEGSKGVPGKDGSGG
DPGEVGPRGEPGQRGPKGDPGRPGFSYPGARGDPGEKGNKGSRGPRGSRGDCGQKGDPGN
KGTPGEAGDPGPTGEPGSRGRKGDPGPKGGPGPEGDPGLTECDVMNYIRETCGCCDCEKR
CGALDIVFVIDSSESVGLTNFTLEKNFVINTINRLGSFASDPLSETGTRVGVVQYSHDNT
FESIKLNDEKINSLTAFKEAVKNLKWIAGGTWTPSALKYAYDTLIRDSRRAKANVTVVVI
TDGRFDPRDNDELLKSLCDKPNVDVNAIGIGDMFQQAEDNESLKSIVCNKPGKVLGMRRF
ADLIAEEFLDKIETVLCPDPVIVCPDLPCKTEPAVASCVQRPVDLIFMLDGSERMGQENH
KRAKEFIKRVARRLTLADGPNDDSKARLALVQFGSAQDHKVEFPLTHNLTVIEDSVDDVK
YLDSSSALGSGIIYAVDSLELRQNQRLIRRNAEMSFVFITDGITSRDQLDEGVAAMSKVE
GVPTIIALGTDTNEEVLHKVSLQDSSAIFRAKDLSMLEKHAFFERFIRWIC
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgatgaagttggaggtcatcgtattctgccttctcttcggcgccctgactcatgctaag
aaagcagaatgcaatgagaagagagaatgtcccatacagttgtacttcaccatagacacg
tctgagaccattgcgatgcaggagccgccccctggagcgctggtggaaagcatcaaggag
ttcacgaagaggtttgttgaccgtttgaaagatgaagaaatccggggtgttgttaaaatc
agctggcaagtcggagggctgcactactcccagaatcagtcggttttcagccgtatccaa
tccagggacgaattcaaaaaagctcttagtactattgtataccttggaaaaggcacctac
actgactgtgccctcagaaggatgagagaggagatgctacaagcacctttagaacactca
aacaaccgttttgctgttgtaatcactgatggccacgtgactggaaatccgtgtgggggt
atcaagatgtcggcagaggcagctcgtgaaaaagaaataaagatattttctgtggcagca
tcaacactaattgaagagaccggactgactgagatcgccagttccccggcatcggtcttc
agggacgacttcttggctgtgaatcttagcacaggccgccctgtcatacagactacgacg
atagaccggattatcaagacgatgagacatatggcgtttgtagagtgttataatgtgtcc
tgccgggagacagagggcccacctggtccaataggatatagagggcagaaaggagctaaa
ggagacaatggtgaagcggggattaaaggagaaagaggtcgcccaggagaccccggcatt
gaaggtcctatcggtcagcctggtactaagggtgaaccaggtgcaaaaggggataaggga
gagattggaagtcaggggaaacagggtgtggctggtctcccagggcgtaatggaactgat
ggacaaaagggcaaaattggacggattggttctccaggctgcaaaggagacccaggcgac
agaggtcctgatggtcaccctggagattctggtgagccagggccaccaggaacggacgga
gaaaagggtgaccctgggcgcccaggaagagatggtcccattggcccagatggcgtgcct
ggaccaaagggagagcctggaagtcctggatcacctggcgaacctggagctaaaggaaac
cctggagaacctggaaaaccaggagacagaggcgaggagggcagaaaaggagactatggc
cccaaaggagaccctggatcagatggtaaaaagggtgaaaagggtgagatgggtccagag
ggaccaagaggaaacccaggggaaaaaggaaacaaaggtgcaaagggagactttggctta
ccaggacctagaggaccagaaggatcaaaaggagtccctggaaaagatggttcaggtgga
gatcccggtgaagtgggaccgaggggagaacctggacaacgaggaccaaagggagaccct
ggaagacctggctttagctatcctggggcaagaggagatcctggtgaaaaaggaaacaag
ggcagtcgtggaccccgtggcagcagaggagactgtggtcagaaaggagatcctggaaat
aaaggaactcccggggaggcaggtgacccagggcccacaggggagcctggatcaagagga
agaaaaggagaccctggtcctaaaggaggtccaggcccagagggagatcccgggctcaca
gaatgtgatgtgatgaattacatcagagagacctgtggatgctgtgactgcgagaaacgc
tgtggagccttggatatcgtcttcgttatcgatagctcagaatctgtgggtctcaccaac
ttcaccttggaaaagaactttgtcatcaacaccatcaatagactgggatcttttgccagc
gaccctctgtctgaaacaggcacacgggttggcgttgtacagtacagccacgacaacacc
tttgaatcgatcaaactcaacgatgaaaagatcaactcactgacggctttcaaggaagct
gtgaaaaacctgaagtggatagcaggaggaacttggaccccatctgctctaaagtatgcc
tatgacaccctgatcagagacagccggagagccaaagccaatgtcacagttgttgtcatt
acggacggacgctttgatccaagagacaatgatgagcttttaaaatctctttgcgacaaa
cccaacgttgatgtgaatgccatcggtattggagacatgtttcagcaggctgaggataat
gagagtctgaaaagcattgtctgcaataagcctggcaaagtgttgggaatgagacggttt
gccgatctcatcgcagaggaattcttagacaagattgaaaccgtgctctgccctgatcct
gtcatcgtatgtcctgatcttccctgtaaaacagagcctgctgtggctagttgtgtccag
aggcctgtggatttgatcttcatgctggatggttctgagaggatgggccaggagaaccac
aagagagccaaagagttcattaagagagtggcacgtcgcctgaccctggctgacggcccg
aatgatgacagcaaagcccgtctggccctggtgcagttcggcagcgcacaggatcacaaa
gtagagttcccacttactcataatctaacagtgatcgaggattcagtggatgacgtgaag
tacctggattcctcgtctgctctgggcagcggtatcatctatgctgtagacagtctggag
ctcagacagaatcaacgattaatacgacgcaacgctgagatgtccttcgtcttcatcacc
gatggcatcacctcccgcgaccagctggacgagggcgtggcagccatgagtaaagtggaa
ggcgttcccacgattatcgccttgggaacggacaccaatgaagaggtcctccacaaggtg
tcactgcaggactcgtccgccatctttagagccaaagacctctccatgctggagaaacat
gctttctttgagcgcttcatccgctggatttgctag
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