Cyprinodon variegatus (sheepshead minnow): 107097528
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Entry
107097528 CDS
T06110
Symbol
dicer1
Name
(RefSeq) endoribonuclease Dicer
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cvg03036
]
107097528 (dicer1)
Chromosome and associated proteins [BR:
cvg03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
107097528 (dicer1)
microRNA pathway
RISC loading complex
107097528 (dicer1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Ribonuclease_3
Dicer_PBD
Ribonucleas_3_3
Dicer_dimer
PAZ
Helicase_C
ResIII
DEAD
dsrm
Motif
Other DBs
NCBI-GeneID:
107097528
NCBI-ProteinID:
XP_015250180
Ensembl:
ENSCVAG00000020035
UniProt:
A0A3Q2EEV4
LinkDB
All DBs
Position
Unknown
AA seq
1857 aa
AA seq
DB search
MAGLQLVTPATSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALERNTIVCLNTDSGK
TFIAVLLTKELSHQIRGSYQENAKRTVFLVNSVSSVIQQAAAVRTHSDLQVGEYTDWKEA
SAWSDQRWSQEISTNQVLVMMCNIFLHVLKSRLLPLSKINLVVFDDCHLAITEHPYRDIM
KFFEECTSGPRILGLTASILNGKCDPSDLEQKIQNLERILKSNAETATDLVVLDRYTSQP
REVVLDCGPYVDKSGLSSRLQAELDEALLFLNDCNIHVSREDRDPTFISKQILSDCRAVL
LVLGPWCADKAAGIMVRELQKYIKHEQEELNRKFLLFTDTILRKVHALCEEHFSPASLDL
KFVTPKVLRLLEILHEYKPLERQQFESVEWYNNRNQDNYVSWSDSEDEDEDEEVEAKERP
EANFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQLR
NKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSK
GRARAPVSNYIMLADSERTKSFEEDLTTYKAIEKILRNKCSKSVEVGEFEAEQSMDDDNL
LPPYVLRSEDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTVETRDGRFQSTLFLP
INSPLRVPVKGPVMNCARLAEKAVALLCCEKLHKIGELDDHLMPVGKETVKYEEELDLHD
EEETNVPGRPGSTKRRQCYPKAIPECLQDSYALPEQTYFLYVIGMVLTTPLPDELNFRRR
KLYPPEDTTRCFGILTAKPIPRIPHFPVYTRSGEVTISIELQKSGFTLSSSQLDLITRMH
QYIFSHILRLEKPALEFKPTLADSAYCVLPLNVVGDSDTLDMDFMFMEDIEKSEARTGIP
TTKYTKQNPFIFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAE
YYKTKYNLDLSNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNK
QILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTATEAGVGVKNLPPDFR
YPNLDFGWKRSIDIKALSPCPESCSEEAECKHQNLTFLALPSSHQGPLPAPADGPCTGNL
TNGTTVINDGHRDEHLQQLDSCQGCDGSSEWKHDATSVPAQAPLSSSPPQPSHECTSRRT
SHHINEATSDCTRTAPSPDLTAGPQAVDSPRNLGPNPGLILQALTLSNASDGFNLERLEM
LGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPP
VNWLPPGYVVNQDKSSSDRVDSEEAREELVSNGRSGNDFDDEDRDDEGEDVDEDELMLKD
EPKDDVNMEDDLEYYKEHIRFIDNMLLGSGAFGKKISLSSFGPPTSPAPGSSPSMDSSYD
WKAPKKPAPHSHCGSAAEEFDYSSWDAMCYLDPSKAGEEDDFVVGFWNPSEENCGTELGK
QSISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQMFLCSLGLKVLPVQRGSHTAA
VVPRVLTSAVELMYGWLKIPPRCMLSHPDAERTLQHLISGFENFEKKINYTFQNKAYLLQ
AFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIF
ASLAVKYDYHKFFKAISPELFHVIDDFVQFQLEKDEMQGMDSELRRSEEDEEKEEDIEVP
KAMGDIFESLAGAIYMDSRMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETA
KFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQLQVQTN
NT seq
5574 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcctgcagctcgtcacccctgctacttcacccatggggcccttcttcggtctg
ccgtggcagcaggaggccatccatgacaacatctacacgcccaggaaatatcaggttgaa
cttctcgaagcagctcttgaacgcaacactatcgtctgcttgaacacggactcagggaag
accttcattgcagtacttctaactaaagagctctcccaccaaatccgagggagctaccag
gaaaatgccaaaaggacagttttcctggtgaattcagtgtcatctgtaattcagcaagcg
gcagcggtcaggactcactcagacctccaggtgggagagtacacggactggaaggaggcg
tcagcttggtcggatcaaagatggagtcaggaaatatccacaaatcaggtgctggtgatg
atgtgcaacatcttcctccatgttctgaagagtcggctcttacctctgtctaaaatcaac
ctagttgtgtttgatgattgccacctggcaatcacagagcacccgtaccgtgacatcatg
aaatttttcgaagagtgcactagtgggccgcgtatactgggcctcaccgcttccatcctc
aacgggaaatgtgacccgtcggatttggagcagaagatccagaatctggagagaatcctg
aaaagcaacgctgaaacggccactgatttggtggtcctggacaggtacacctctcagccg
agggaggtggtgctggactgtggtccctacgtggacaagagcggcctttcatcccgtttg
caggcagagttggatgaagctctcctcttcctcaacgactgtaacatccatgtttccagg
gaggacagagatcccacctttatatccaaacagatcctgagcgattgccgggctgtgctg
ctggttcttggcccctggtgtgcagataaggctgcgggtataatggtgcgggagctgcag
aagtacatcaaacacgagcaggaagaactcaatagaaagttcctgctctttaccgacacc
atcctgcgtaaggtgcacgctctctgcgaggagcatttctcccccgcctccctggacctg
aagttcgtcacgccgaaggtcctgcggctgctggagatcctgcacgagtataagccactg
gagcgacagcagttcgagagcgttgagtggtacaacaaccgcaaccaggacaactacgtg
tcgtggagcgactcggaggacgaagacgaggacgaggaggtggaggccaaagaaaggccc
gaggccaactttccttctccgttcaccaacatcctgtgcgggatcatctttgtggagagg
cgctacacagctgtggttctgaaccgtctgatcaaagaagcagggaagcaggacccagag
ctggcctacatcagcagcaacttcatcaccggccacagcatcggcaagaaccagctgagg
aacaagcagatggaggtggagttcaggaagcaggaggaggttctccgaaagttcagggct
catgagaccaacctgctgattgccaccagcattgtggaagaaggtgttgatattccaaag
tgcaacctggtggtccgctttgacctgcccacagagtacaggtcctatgttcagtccaag
ggtagagcccgggcccccgtctccaactacatcatgttggctgattctgagcggaccaag
agcttcgaagaagatctgaccacctacaaggccatcgagaagatcctgaggaataaatgc
tctaaatccgtggaggtgggagagtttgaagcggagcagagtatggatgatgataacctc
ctccctccgtatgtgctgcgttctgaggatggaggtccacgcgtcaccatcaacactgcc
atcgggcacattaacaggtattgtgctcggctgcccagtgacccgttcacgcacctcgct
cccaaatgtaaaaccgtggagacaagagatggacgctttcagtctacgctcttcttaccc
ataaactctcctctgagagttccagtcaagggtcccgtcatgaactgcgcccgtctggct
gagaaagctgttgctctgctctgctgtgaaaaactccataaaataggcgagctggacgac
cacctgatgcctgtggggaaggagacggtgaagtacgaggaggagcttgacctccacgac
gaggaggagaccaatgtcccgggtcggcccggctccaccaagaggaggcagtgctaccct
aaagccataccagaatgtctgcaggacagctacgccctgccggagcagacctacttcctg
tatgtgatcgggatggtcctcaccacgccgctccccgatgagctgaacttccgtaggagg
aagctgtacccccccgaggacacgactcgatgctttggcatcctgacagccaaacccata
ccccgaatccctcatttcccggtatacacgcgctctggggaggtgaccatctccatcgag
ctgcagaagtcgggcttcacactcagctcgtcccagctggacctcatcacccgcatgcat
cagtacatcttctctcacatcctccgtctagagaaacctgcacttgagttcaagccaacg
ttggcggactcggcttattgcgttctacctctgaatgtcgttggagactctgacactctt
gatatggactttatgttcatggaagacattgagaagtcagaggcccgaacaggcattcct
acaactaagtacaccaagcagaaccccttcatcttcaagctggaggactaccaggatgct
gtgatcattccaaggtatcgaaacttcgaccagcctcatcgtttctacgtcgctgacgtc
tacacagacctgacgccgctcagcaagttcccatcgccggagtatgagaccttcgcagag
tactacaaaaccaagtacaacctggacctgtccaacctgaaccagccgctgctggatgta
gaccacacctcttcaagactgaacctgttgacgcctcgacacctgaaccagaaggggaaa
gctttgcctctgagcagtgcggagaagaggaaggccaagtgggagagtctgcagaacaaa
cagattctggttccggagctgtgtgccatccatcccattccggcctccctgtggaggaaa
gctgtgtgtctgcccagcatcctgtaccgcctccactgcctgctgacggccgaggagctg
cgggctcagactgccaccgaggctggagtgggggtgaagaacctcccccctgacttcagg
tatccaaacctggactttggctggaagagatccattgacataaaagcgcttagcccctgt
cccgaatcctgcagcgaagaggctgaatgtaagcaccaaaatctcactttcttagcactt
cccagcagtcaccaggggccactcccggcccctgcagacgggccctgcactgggaaccta
acaaatggcactaccgtgatcaatgacggccacagagacgagcaccttcaacaacttgac
agttgccaaggctgcgacggcagctctgaatggaaacacgacgctacctcagttcctgcg
caggcccccctcagctcaagtcctcctcagcccagccatgaatgtacctccaggaggacc
tcgcaccacattaatgaagctacctcagactgcactcgtacagcaccttcccctgaccta
accgccgggccccaggctgtggactccccaaggaacctgggccccaaccctggcctcatc
ttgcaggccttgactctgtccaacgccagcgacggcttcaacctggaacggctcgagatg
ctcggggattccttcctgaagcacgccatcaccacctacctgttctgcacctaccctgac
gcgcacgaagggagactcagctatatgcgcagcaaaaaggtgagcaactgtaacctttac
cgtctggggaagaagaaggggcttcccagcaggatggtggtgtccatctttgaccctcct
gtgaattggctgcctcctggatacgtggtgaaccaggacaaaagcagctcagaccgagtg
gactctgaggaggcgagagaggagctggtgtccaacggtagatccgggaacgactttgat
gatgaggatcgggacgacgagggtgaggatgtggatgaagatgagctgatgttgaaggat
gaaccaaaggatgacgtcaacatggaggatgacctggaatactacaaggagcacatccgt
ttcattgacaacatgctcctggggtccggggcgtttggaaagaagatctctctcagcagc
ttcggcccccccacaagcccagctccaggctcctccccttccatggactcctcctatgat
tggaaggcccccaagaagcccgcccctcactcccactgtggttcggcggccgaggagttt
gactacagttcgtgggatgccatgtgctacctggaccccagcaaggcgggcgaagaggac
gactttgtggtggggttctggaatccatcggaggagaactgcggcacggagctgggaaag
cagtccatctcctacgatctgcacacagagcagtgtattgcagacaagagcatcgccgac
tgtgtggaggctctgcttggctgttacctgacgagctgtggggagagggccgcccagatg
ttcctctgctcgctgggcctcaaggtgctgccggtgcagagggggtctcacacggcagcg
gtggtgccacgagttctgacctcagccgtggagctgatgtacggctggttaaagatcccg
cctcgctgcatgttgtcccaccctgacgcagagcggacgctgcagcacctcatctctggc
tttgaaaactttgaaaaaaagatcaactacacatttcagaacaaggcgtacctgctgcag
gccttcacccacgcctcgtaccactataacaccatcacagattgttaccagcggctggaa
tttctgggcgacgcgatcttagactacctcataacgaagcacctttatgaagacccgcgg
caacactcgcctggagtgctgaccgacctgcgctcggcgctcgtcaacaacaccatcttc
gcctcgctcgccgtgaaatacgactatcacaagttcttcaaggccatctctccagagctg
ttccacgtcatcgacgactttgtgcagttccagctggagaaggatgagatgcagggcatg
gactctgagctgcgacgctctgaggaggacgaggagaaggaggaggacatcgaggtgccc
aaggccatgggggacatctttgagtctctggctggagccatttacatggacagcaggatg
tccctggagacggtgtggcaggtctattatccaatgatgaggcctctcattgagaaattt
tctgccaacgttcctcgctctcctgtccgggaactcctggagatggaaccagaaactgcc
aaatttagccctgcagagcgtacctacgacgggaaggtgcgtgtgacggtggaggtagtc
gggaagggaaagttcaaaggagtcggccgcagctaccggatcgccaagtcggcggccgcc
cgccgagctctgcgcagcctcaaagccaatcaacttcaggtccaaaccaactga
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integrated database retrieval system
