Cyprinodon variegatus (sheepshead minnow): 107100309
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Entry
107100309 CDS
T06110
Name
(RefSeq) glutamate receptor ionotropic, NMDA 2D-like
KO
K05212
glutamate receptor ionotropic, NMDA 2D
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04020
Calcium signaling pathway
cvg04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
107100309
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
107100309
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cvg04040
]
107100309
Ion channels [BR:
cvg04040
]
Ligand-gated channels
Glutamate (ionotropic)
107100309
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
ANF_receptor
Motif
Other DBs
NCBI-GeneID:
107100309
NCBI-ProteinID:
XP_015254237
LinkDB
All DBs
Position
Unknown
AA seq
1956 aa
AA seq
DB search
MVAIPTLSLLLVLAEWAGLVDASPHLLLRPSPRERDAGAMMNFNIAVIHAGATVQAEAAV
AGPGGRVLYPGFGRVYGSLGESVVTQWGSANVIWLQVNDSSPKTVLSQLCDLLAARPLQG
LVYEEERPPPTAWGPLAPMLEFVSAQTGLPIVAVGGGAGLGRMPQESGSIFLQFSSSTAL
QLEVIFEVLEEYDWTAFSVVSTRHHGYQDFLSVVEGLTDGSFIGWEKKSVVILNVTDDPG
GARTRRLLKENEAQVRLLYCSQEEAELVFRAAWAAGQAGASHMWFAVGSALSGLGMESLP
RALFAVRPQGWRDEPRRRIARGVSVLTHGAVAMRKEYGSTGGPNFVTTCMTDANQTQRLR
SRMRYFSNITLGGRDYSFNSDGYLANPFLDVISWTPGRGWEDVGWWENGVLRLRYPAWSR
YGPFLKPPDDAQHLRVVTLEERPFVIVELADAASGTCIRDSVPCRRPLNASAIHEGLAPL
KQCCKGFCIDILKRLAKIVGFTYDLYLVTNGKHGKKIDGVWNGMIGEVVYKRADMAIGSL
TINEERSEVVDFSVPFVETGISVMVSRSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAVT
VFIFEFFSPVGYNRSLQTGKKAGGSTFTIGKSVWLLWAIVFNNSVPVENPRGTTSKIMVL
IWAFFAVIFLASYTANLAAFMIQEEYIDTVSGLSDKKFQHPEEQYPPLKFGTVPNGSTEK
NIRSNYPDMHQYMGKYNQRGVEDAILNLKTGKLDAFIYDAAVLNYMARKDEGCKVMTIGS
GKVFATTGYGIALHKNSRWKRPLDLALLQLVGDDEIEMLERLWLSGICHNDKIEVMSSKL
DIDNMAGVFYMLLVAMGLSLLVFAWEHLVYWKLRHCMATSSGKLDFLLAISRGMYSCCSF
EDETAPGGSKSLPSHHHTAMVTVPSQPHVVSTTVTNPAIAMAQQQQQPQQQQPPPVFKTP
LPGSPPTVVHSGSTLGSSNPPIAGAPLPCSTFLPRPDRRLAVVDRWRLPKTATATNPMAV
RGGITDMGPFAQKVPQNWTTAAGGSGGLDGYKRYYGPIDPEGLGSCIDQQAGSQTPKTMP
RGHPQPPPASVAFYSEKSMDHGVVKKVVGGGGGSQGKGPVKPVGTPRLPPKSQAPLPPTP
PLPHPSPPLPSSFWRKRRPKKPKEPGGPLYENILPLGRRGGARDGMREAGVRRTRPLSPP
LSLPIPVPLSPSYTPPSPSASLHYTSSSSTSTTSTTSTSSSASSSRSTSPTYSYSSSRST
RDRTGGIEGEDDDDDEDLTEESSLLLGRGRERERSIIRPRSLSHGRLPPPIPPRKPRTSW
GDRERERERERGGSQLSQLQEWWASWSERERSGAGGETERQKREKKRRKEKEKEKKKKKK
NKKRKKREERERERERERKRRKVKKKKKKALKTKKRKKSIGGKRSEPEEGDVEQEREGEA
GRERDEGIQDYSSFSAQYGSTFGEKGRDSWEGERERGRGEDGNDRDEDDSGRSRERHSKS
SHAHSRRRIPDKRYSNSNKFPASVKFWMNGRGDNSDATPVSLHPLLPSSKRRKSGGIDRE
DNSRVGERRPLLMHYEKEKTQTREGLSFHEWDSDEDDEDDDDDEEEEDRERVRERGEDRG
RRVGRGAVSESERDRGRVDSYSDEGSSGEFGRFERYWEESAGGAGTGIGGIGGGGWFFGT
YPSREKGGSINSRDDSLLGTRAEGWIGTDFWGSGPGIGWTSGGGSGGLGSQWPPTPTAFP
PPRRYWSMDKIPAKGEKKWKSGGGKRRRRSRERLDQAGRATLCSCSLYPQPHPYPHPHGR
SHTSNSKRRPSTLSHSQEELLPHCHSFSGGSRPKPLPPKPDSSQAKSGSQSNLSLNTQPT
DHPPQPLPSPPQQPSLSPTSLPMPIAPPPSSASVSPPAGVGMAGQAQASASAKLQYQRLR
SVPQPRRFYSPHLPLKAKSLCSRRGSAHFSSLESEV
NT seq
5871 nt
NT seq
+upstream
nt +downstream
nt
atggtcgccatacctactctctctctcctattggtcctggcagagtgggcaggtctggtg
gacgcatccccccacctcctgctccggccaagcccacgggaacgtgatgcaggggccatg
atgaacttcaacattgccgtgatccacgccggtgccacagtgcaggcggaagcggcggtt
gcagggcctgggggaagggtgctctaccctggcttcggacgggtctacggctccctcggg
gagagcgtggtcacccagtggggctctgccaacgtcatctggcttcaggtgaatgacagc
agccctaaaacggtgctgtcccagctgtgtgatctgttagcggcgaggcccctgcagggt
ctggtctatgaagaggagaggccccctcctacagcttggggtcccttggcccctatgctg
gagtttgtgtctgcacaaacaggactgcctatagtggctgtaggcgggggagcaggactg
gggaggatgccacaggaatcaggttccatctttctccagttcagttcctccactgcgcta
cagttagaggtcatcttcgaggtactggaggagtacgactggaccgccttttctgtggtg
tccactcgccaccatggttaccaggacttcttgtccgtggtggagggccttacggatggc
tcgttcatcggctgggagaagaagagtgttgtgatcctgaacgtgaccgatgacccaggg
ggggcacgcactcgcaggctgctgaaggagaacgaggcgcaggtgcgtctactgtactgc
tctcaggaggaggccgagctggtcttccgtgctgcctgggccgctggtcaggctggggcc
tctcatatgtggttcgcagtaggctctgcactctcaggtttgggcatggagagcctgcct
cgggcattattcgcagtacggccccagggctggagggacgagcctcgccgaaggatcgct
cggggtgtgtctgtgctcactcatggggcagtggcaatgcggaaggaatatggaagcacc
ggcgggccaaactttgtcactacttgcatgacagatgcaaatcagacacagagactgcga
agcaggatgaggtatttcagcaacataacactgggtggtcgagactattccttcaatagt
gacggttacctggccaacccattcctggacgtcatctcgtggacacctggcagaggatgg
gaagatgtaggctggtgggagaatggtgtgctgaggcttcgttacccagcatggtcccgc
tatgggcccttcctgaagccacctgacgatgcccagcacctacgcgtcgtaacactggag
gaaaggccatttgtcattgtggagcttgcagatgctgcttcaggaacttgcatccgagac
tctgttccctgcagacgacccctcaatgccagtgctattcatgagggtttggctcctcta
aagcagtgctgcaaaggtttctgcattgacatcctaaagcgcctagctaagattgttggt
tttacctatgacctctacttggtgaccaatgggaagcatgggaagaaaatcgatggcgtt
tggaatggcatgattggagaggtggtgtacaagcgggcggacatggccatcggctcactg
actatcaatgaagagaggtccgaggttgtggatttctctgttccctttgtggaaacaggg
atcagtgtcatggtctcccgtagcaatggaactgtttcaccatcagctttcttagagcct
tacagtccagcagtgtgggtgatgatgttcgtcatgtgcctcactgtcgtggcagtgact
gtctttatttttgaatttttcagccctgtgggctataatcgcagtctgcagacaggaaaa
aaggctggagggtccactttcaccattggaaaatctgtatggcttttatgggccattgtt
tttaacaactctgtaccagtggaaaacccaagaggaaccacaagcaagatcatggtgctg
atttgggccttctttgcggtcatttttctggcctcctacactgctaacctggctgccttc
atgatccaggaggagtacatcgacacagtttcaggtctctcggacaagaagtttcagcat
ccagaggagcagtacccacctctgaagtttggcacagtgcccaacgggagcacagagaaa
aacattcgctcaaactatccagacatgcaccagtacatgggaaaatacaaccagaggggg
gtggaggacgccatcctgaacctaaagacagggaagctggatgcttttatttatgatgct
gcagtgttaaattatatggccaggaaggacgaaggatgtaaggtgatgaccataggctcg
gggaaggtttttgccaccacaggctacggtatcgccctgcacaaaaactcacgttggaaa
cgtcctcttgatctggccctgctgcagctagttggagatgatgagattgaaatgctggag
cgcctctggctatcaggtatctgccacaatgacaaaattgaggtgatgagcagtaaactg
gacattgacaacatggctggggtcttctacatgttgctggtggctatgggcctcagtttg
ctggtgtttgcctgggaacatttagtctattggaaactccgccactgcatggcaactagt
tccggcaaattggactttctcttagcaataagcaggggcatgtacagctgctgcagcttt
gaggatgaaacagcaccaggtggctctaaatctttgccttcacaccaccacacagcaatg
gttactgttccatcacagccacatgtggtctcaactactgtgaccaacccagcaattgca
atggcgcaacagcagcaacaaccacaacagcagcaaccaccacctgtcttcaaaacacct
ctaccaggctctcctcccactgtggtgcattctgggtcaaccctgggttcttctaacccc
ccaattgctggtgcccccctcccttgctccactttcctgcccaggccagatcgcaggtta
gcagtagtggatcggtggaggttgcctaaaactgctacagccaccaatccgatggctgta
agagggggcatcactgacatggggccgtttgctcagaaagttccacaaaactggactaca
gctgctggagggagtgggggactcgatggctataagagatattatggtcccattgaccct
gagggactggggtcctgtattgatcagcaagcagggtcccagacccccaagactatgcca
aggggccacccccaaccccctccagcaagtgtggccttctattcagagaagagcatggac
cacggggtggtgaagaaggtggtgggaggtggcggtggaagtcaggggaaagggcctgtt
aaacctgtgggcaccccaaggctgcctcctaagagtcaggcccctctgcctcctacacct
ccactgccacatccctcgccccctcttccttcatccttttggagaaagcggaggcctaag
aagcctaaagagcctggaggaccactgtatgagaacattttgcctctggggcgaagggga
ggagcaagagatggaatgagggaagcaggagtgagaaggacccgcccactttctcctcca
ctctcactccccataccagttccactcagcccctcctatacccctccttctccttctgca
tctttgcactatacgtcctcgtcctctacatcaaccacctcaacaacgtcgacgtcttca
tctgcctcatcgtctcgctccacctctcctacctactcttacagctcttctaggagcaca
cgagacaggactggcggaatagaaggagaggacgatgatgatgatgaagatctgacagaa
gagtcaagtcttctccttgggagaggaagagaaagggagcgctcaatcattcgcccacgt
tccctaagccatggccgtttgccaccaccaatacccccaaggaaaccacgcacatcatgg
ggtgacagagaaagagaacgggaaagagaaagagggggtagccaactgtctcaactccaa
gagtggtgggcaagctggagtgaaagggagagaagtggagcaggtggggaaactgaaagg
cagaaaagggaaaagaagaggaggaaagaaaaggagaaggaaaagaagaaaaagaaaaag
aacaaaaagaggaaaaagagagaggagagggaaagagaacgggagagagagaggaagcga
aggaaggtaaaaaagaagaagaaaaaggcattaaaaacaaagaaaaggaaaaagtctatt
ggtggaaagcggtctgaacctgaagaaggagatgttgaacaagagagggagggagaagct
gggagagaaagagatgaaggaatacaagactattcttctttttctgcccaatatgggagc
acgtttggagaaaaaggaagagattcatgggaaggtgagagagaaagaggcagaggggaa
gatggcaatgacagagatgaagatgacagtggaagaagcagggaaaggcattccaaatcc
tcgcatgctcattctagacggcgaattcctgataaacgctactccaactcaaataagttc
cctgcctctgttaaattttggatgaatggaagaggagataacagcgatgctaccccagta
tctctccacccacttctcccatcctctaagaggcgaaaaagtggagggattgacagagaa
gataacagcagagttggggagaggcgtcccttgttgatgcattatgaaaaagaaaaaacc
caaacaagagaaggactgtctttccatgaatgggactcagatgaagatgatgaggatgac
gatgatgatgaggaagaggaagacagggaaagagtgagggaacggggagaggacagagga
aggagggttggtagaggggctgtctctgagtctgagagagacaggggaagggtggacagc
tactcagatgagggttcctcaggggaatttggtcgttttgaaagatattgggaagaaagt
gcaggaggcgctggcactggaatcggaggcataggcggaggaggctggttttttggcacc
tatccctctagagagaaagggggtagcatcaatagtagagatgattccttactgggaact
cgggcagagggttggattggtacagatttctggggatctggaccaggtattggatggaca
tctggtggaggaagtggagggctgggctcacaatggccaccaaccccaactgccttccct
ccacctagaagatattggtcaatggacaaaattcctgcaaagggagaaaaaaagtggaag
agtggaggtggaaagagaagaagacgaagcagggaaagactggatcaggcaggacgggca
actctgtgttcctgtagtctttacccccaaccgcatccttatccacatccccatggacgg
tcacacacctctaactccaagagaagaccctcaacactttcccatagccaagaagagctt
cttccccactgccacagcttcagtgggggttctcgtccgaaacctttgcctcccaagcca
gattccagtcaagccaaatcaggcagccagtctaacctcagcctcaacacacagcctaca
gaccatccgccacagcccttgccgtcaccaccacaacagccatccctgtcacccacctca
ctccccatgcccattgcacctccaccctcctcagcctctgtgtcaccaccagcaggggta
gggatggcaggtcaggctcaggcatcagccagtgccaaactccaataccagagactgcgc
tctgtgcctcagccacggagattttactctccccatctaccactcaaagccaagagcctg
tgctcacgtcgaggatcagcccacttttctagtctggagagcgaggtatga
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integrated database retrieval system
