Crassostrea virginica (eastern oyster): 111122313
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Entry
111122313 CDS
T09197
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111122313
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111122313
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111122313
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111122313
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF948
DUF745
DUF2730
Motif
Other DBs
NCBI-GeneID:
111122313
NCBI-ProteinID:
XP_022319699
EnsemblRapid:
LOC111122313
UniProt:
A0A8B8CWS2
LinkDB
All DBs
Position
2:43060741..43073317
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AA seq
757 aa
AA seq
DB search
MADRRKLQGEIDRCLKKVTEGVESFEDIWQKVHNAANTNQKEKYEADLKREIKKLQRLRD
QIKTWCASSDIKDKRCLVENRKLIETQMERFKVVERETKTKAYSKEGLGAAAKLNPAAKE
KSEVTNWLSQTIDNLNIQLDQFESNVEKLTSKKKKMDKDKQDRFEELKGHMDKHKYHIKQ
LETILRMVDNDAIPLEQIKKIKDDVEYYVEFNQEPDFEENEFLYDDLDLEDLGAQMLASS
PPNDDINMEALSSTPTSTNSSSPSPSPSLSLNHSKEKSDDERKRHKSQNDERSVPVISSP
SSTNSSSSSTVPVNNKVPSTPTKLFQGNASTIESSNSNHRPNSTPPPLTGFSSVAASSQQ
NNNTGITIPRLPVGSTVWQGDISPMKFSYLTDRFIKRDSKNQVNALDHLALNSNLTVNSS
TSSVTHSNSNSVSVTSVGNPSLVPAPSPLFSSNGTTVPFSNSLPMVVSNSIPTSNSLTSQ
TTNGPSSHPPPSEVVMNGPLSAGAPVLKGISDMEDSSSDSMSSLKSIAQQAVVNAGLENQ
IPTPPPMSSESRLQFNSSTSLTTTLPTSSQVVSQSTCTSLSPSDQTSQQPQTTTIHLNPL
LGVAPLGPVPLSRENFYQLQMLEAAYHHLPHPSDSERQRSFLPRNPCPTPSYYPQLPPPH
ADSVEFFQRLSTETLFFIFYYMEGTKAQYLAAKALKKQSWRFHTRYMMWFQRHEEPKTIT
EDYEQGTYIYFDYEKWCQRKKEGFTFEYRYLEDRDLN
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atggctgataggcggaagctacaaggtgaaattgacagatgcctcaagaaagtaacagaa
ggagttgagtcatttgaagacatctggcaaaaggttcataatgcagcaaacacaaatcaa
aaggagaagtatgaagcagatcttaagagagagattaaaaaattgcagcgtcttagagac
cagatcaaaacatggtgtgctagcagcgacatcaaggacaagagatgtcttgtggaaaac
agaaaacttattgagacgcaaatggaaagatttaaagtggttgagagagaaaccaagacc
aaggcatattctaaggaaggacttggagctgctgctaaacttaatccagcggcaaaggag
aagtctgaagtcacaaactggctctcgcaaaccattgataatttgaatattcagttggac
cagtttgaaagtaatgtggaaaagctaacatcaaagaagaagaaaatggacaaagataaa
caagatcgatttgaagaattgaaagggcatatggacaagcacaaatatcatataaagcag
ttagaaaccattcttcgtatggtggataacgatgccatcccattggaacagatcaagaaa
atcaaagacgacgtcgagtattatgtggaatttaaccaggaacctgattttgaagaaaat
gaattcctctatgatgacttggatctagaggatttaggtgcacaaatgcttgcatcttcg
ccaccgaatgatgatatcaacatggaagcattatcaagtactccaacttccacaaattca
agttcaccctcgcccagtcctagtctgagtttgaaccattccaaagagaagtcggacgat
gaaaggaaaagacacaaatcacaaaatgatgaaaggtctgtacctgtgatttcttctccg
tcatcaacaaattcttcatcatcatcaacggttcctgttaataacaaagttccatcaaca
cctacaaagttattccaagggaatgcctcaacaatagaaagttcaaatagcaatcatcgt
cccaattccacccctccacccctgaccggattttcttcagtagcagccagctctcaacaa
aacaacaacacaggtataaccatcccaagattacctgttggttctactgtgtggcagggg
gatatttcccctatgaagttttcttacttaactgaccgttttattaaaagggattcaaaa
aatcaagtgaatgcgttggaccatttggctttaaatagtaacttgacagtgaacagcagt
acgtcatcagtgacacactcaaattcaaactctgtctcagtgacttctgtaggaaatccc
tctttagtgccagctccgtcaccattgttctcgagcaatggaacaacagtgcccttttca
aattcattgccaatggttgtatcaaatagtataccaacaagcaactccctcacaagtcag
acaacaaatggacccagctcgcatccgcccccatcagaggtggtgatgaatggacctttg
agtgcaggagcaccagtattaaaggggatcagtgacatggaggacagtagctcggactcc
atgtcctcgttgaagtctatagcacagcaagctgtggtcaatgcgggtttagagaatcag
ataccaacacctcctcccatgtcatcagaatcgagattgcaatttaatagttccacgtca
ttaacgacgacattaccaacttcgtcacaagtggtgtcacaaagtacatgtacgtcccta
tcacccagtgatcagacatcacaacaaccgcaaactaccaccatacacctcaacccgcta
ctgggtgtagcgcctctgggtccagtgccactgagcagggaaaacttttaccaattacag
atgttagaagctgcatatcaccacttaccacacccttcagattctgagaggcaaaggtct
ttccttccccgaaacccttgtccaacaccctcctactacccacaactgcccccaccccat
gcagactctgtagagttctttcaacgactatccacagagacactcttctttatattttat
tatatggagggtacaaaagctcaatatctggcagcaaaggctttaaaaaagcagtcctgg
cggtttcatacaaggtacatgatgtggttccaacggcatgaagagccaaagacaataaca
gaggattatgaacagggcacttacatttattttgactacgagaagtggtgccaaaggaag
aaagaaggttttacatttgaataccggtatctggaggacagagacttgaactaa
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