Crassostrea virginica (eastern oyster): 111124701
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Entry
111124701 CDS
T09197
Name
(RefSeq) E3 SUMO-protein ligase RanBP2-like isoform X1
KO
K12172
E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03013
Nucleocytoplasmic transport
cvn03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111124701
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
111124701
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111124701
03110 Chaperones and folding catalysts [BR:
cvn03110
]
111124701
04121 Ubiquitin system [BR:
cvn04121
]
111124701
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
111124701
Chaperones and folding catalysts [BR:
cvn03110
]
Protein folding catalysts
Peptidyl prolyl isomerase
Cyclophilin
111124701
Ubiquitin system [BR:
cvn04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
111124701
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ran_BP1
zf-RanBP
WH1
TPR_2
TPR_1
TPR_8
TPR_12
TPR_14
Fis1_TPR_C
TPR_16
TMF_TATA_bd
TPR_19
vATP-synt_E
TPR_11
Motif
Other DBs
NCBI-GeneID:
111124701
NCBI-ProteinID:
XP_022323532
EnsemblRapid:
LOC111124701
UniProt:
A0A8B8D5W9
LinkDB
All DBs
Position
3:complement(71175597..71201841)
Genome browser
AA seq
2639 aa
AA seq
DB search
MSFSTPIRSRGANRSKEDVDKFVDRIQETERAARGYQIGLLYYEVKEYGKAKRYVEEHMA
IRPRIPQTHKLLGQIEEACQHPAEAIEAYKRSLELDPKQKALILKICELYNKIKDADLQV
LKYWYRRGESFYPGHPEIFKLKEKVVSGGGGDPKDMEKFYVMEINKNPDDVRLHSKLLEV
YLQSEKTLRDAYRYCTDPTKFNKFLAQKEWLEQVVKVFEAYEKRENVSSDSRFLTQKLMV
LMGLLYCQLSGNDLMACVSLLHQLDQNLFSASTLSSTKPEWQAFLKEAQGQLYFLFGLML
YKRAEKRQISWRDASSFAAVCFMVSGNIPLLETRKSWYKLMSGDQKKMIDRLKNLSCYRL
SQGGYLLLPLTEKGSVVRMREYRQLQTGKAVDRMYELMFTLREMRNRSLSSFLVMKDLFI
DATLVAPSKQSLEAYDAGVFSLHEGNLQELVWIAVNRYSTQEETQKSYPLCVPDKIPFFT
KDMSSAAPESLCQLDIMAFFFATVKCAASAYEERCKVTRFDQYQPRLLPACFSANLCTEP
QREWWDAMYKFCHNLARDQTPKLRLVIQRGLETVRLGGTHGVSVALIIHLARTFDERVKE
LKSLELEDGDRLHALERRAAHYWEEAMVLLSRIERKMNIPLPKDRLFIDDRPMSLDENRI
QYLIEQSKFSLATVAMREGRLEEAREQFLKLKLPWASYYLAQIYRKMADEIMTTDEEATN
QKLALVEQSLDALYQTMDKIQGEKNHELHRMIPNDIDECVCELENLRRAALGISVVDSVS
RYEDAKDDVDGSDEDTPSYSTPTASREDREQSMRALSPLSMLPTSSSTPAVKVKSPASVH
FSPNEARSRTRGSPERLEARLWALEAKQQTTLELMSELKDQLKELRQERAQFRELEKKMM
EHILTCNTQPSQPYMPSVLPPPPPPPPIPYQQIPHLPSQFPSYPPTSWIPPSSYNYTQPA
SPIPGGGPMSNRRQFGRAGQLRPEFEEEISQFGEDLYVDDGSQPLPAVCVEPPSQLVQDW
PFGNKAGMEGKSTITYAPPPPAGGRLPQPGLLANTLRGPALQYFTSSQEQKPMPGPGFFS
SPKPEAPPSASVIAQALAKSASPSVTPALSSLAGQPIPSISAGLPSMEGTGSSMPLFGSL
MAASKSPDKVASGEPATQGILHPPGKFSFTAPTVSSSASAGSLSFMGESTASPSSVPVTQ
SSSVPGTFAGFGSKPQVPGSSGSFSFTKPAFGTPPTTAASETPGGASPFTSFTGFGSSGL
ASFGGLGSQAENSDKGTSAFGVKTTPTPSPVKPADTFSQSTPSQSPRKRNNSTTVEEYEP
NVDFKPVIDLPDLVEVKSGEEDEEVLFCQRAKLFRFDADTKQWKERGVGEMKILKHRTRN
SSRIMMRREQVLKLCANHKITQDLKLSPMANSDKTWCWVANDYSEEELKVQKLAVRFKTA
ELAADFKEVFEKCQKEGEVETSPAEISKSPEKMEPIKSQASTEKTADVKQVSLQEMFKPK
AGTWTCQTCMIQNGPEASVCVACSTRKPSGKPSPVKEEVKPSIPKTDQPSLAELFKPKSG
SWSCEICLVTNDADKLRCVACSTLKPGVKAEDVKQEGKAATGGLHFGTQSTAKSGFTFGA
SAASSTPATGGFVFGTSTTASSTAAPGGFVFGSPSTSKSGATSTAGGGFVFGTSTTKTTT
PATKGGAGFTFGTAPVKTTTADTTATTKTGITFGTPTTQTAAAKSVISAETTKTQVTAAP
TKPAVTSTSGFPFGTSASTTTGSSESGGFNFGGGANKGFSFGTSSKEEKTSSEKSGFNFG
GVKSSGFSFGTPSTKGEKPETVALDSGKTENVGGNSNSSTLFGSTGSAGFSFGQKSFTFG
SKSPEQKPDSTTSVTVTPKPVDSASGPKAEPVIFGVDSSAKSGFQFQLDSSTTSTSENKD
KDKSPFKFTFSPSKSSSTVPKSPDVDREGMYVNKEGEDDHIFFEPVIQLPDKVDVVTGEE
DEKVLFEHRAKLFRFHNKEWKERGLGDIKILENKRTKRIRVLMRREQILKICCNHNISED
LDLKPMPNSNGKAWTWYAMDHSDDEPKCEQFSVRFKTPEIANKFKAAFDLAKSKVSGQSE
PAETQTPSSPAVTSSRPPIMLQTLLSEDEDLVFVKEEKATPAQVAQARKFMLPDHFYLYE
NAPPCPGCVGCEDYQEGTKISRKTRTPSPKKKQEEIPPKTSNADPSSSGGLFGATAAPSG
GLFGATAAPSGGLFSALALGGGGDSAAATGLFGQPQGATGGIFGGGGGSSFSFSGIAAAI
DSQPTAFKKDDTKPFSWSGAGQKLFKQEEGEEEGDEVPQGEDPHFEPVVPLPDLVEVKTG
EEDYEKLFSNRAKLFRYDKDTQQWKEKGIGEMKILRHIGTGQYRLLLRREQVLKLACNQW
LTPDLKFQPMHTSETAWCWVGQDFSDNEAKLEQLAVKFKTIELAKEFKDKIDECQKLLAE
NPPATIATNPQTDHGSQGNSTEDPDDEDVEEDDDDEYDDVEEILLEKRVTFYMIENNQWK
DKGTGVLRVIYDDDVNANKVTFTTDKKEDLCNHLIAMESNINIDKGKRYCEWHPIDFATD
EPIRRGFRAVFSSVPAAEDFYKSFQQGQTLARDSEISERDMTARELTFPEVHGQGANDD
NT seq
7920 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttttcaacaccaatacgttcacgcggagcaaaccgttctaaagaggatgtcgac
aaatttgtcgacagaattcaagaaacggagagagcagcaagaggatatcagataggactt
ttgtattatgaagtcaaggaatatggaaaggcaaaaagatatgttgaggagcatatggcc
atcagacctcgaattccgcagactcacaagctgttgggacagattgaggaggcgtgtcag
cacccagcagaagccattgaggcctataaaaggtcactagagttggatcccaaacagaaa
gctttgattttgaaaatttgtgaactctacaataagataaaagatgcagatctgcaggtt
ttaaagtattggtatcgacgaggagaaagcttctatcctgggcatccagaaatcttcaaa
ctaaaggagaaagttgtttcgggaggaggtggagatcctaaagatatggaaaaattttac
gtaatggaaataaacaagaacccggatgacgtccggctgcacagtaagctgttggaggtg
tacctgcagtcggagaagaccctgagggatgcctacaggtattgcacagaccccacaaag
ttcaacaagttcctggcccagaaggagtggctggagcaggtcgtcaaggtgtttgaagct
tatgagaagcgagagaacgtgtcctcagattcccggttcctgactcagaagctgatggtt
ctgatgggtctgttgtactgtcagttgtcagggaacgacctcatggcctgtgtctcactt
ctccatcaattggaccagaatttgttcagtgcttcaaccttgtcatctacaaaaccagaa
tggcaagccttccttaaagaggctcaggggcagctctactttctgtttggactgatgtta
tataaacgagcagagaagagacagatttcttggcgagatgcgagctctttcgcagcagta
tgtttcatggtcagtggaaatattccacttttggagaccagaaagtcctggtacaaactg
atgagtggggatcagaaaaagatgatagaccgactgaagaatttaagctgttacagactg
agccagggagggtacctgttgctgcccctcacagaaaaaggaagtgtggttcgaatgagg
gaataccgccagttacagacaggcaaggcggtggacaggatgtatgagctgatgtttaca
ctgcgggagatgaggaaccggtccttgtcctcatttcttgtgatgaaggatttatttata
gatgcaacactagtggcgccctccaagcagtcactagaggcctatgatgcaggagtgttc
agtctacatgaaggcaacctacaagagctggtttggattgctgtcaacagatactccact
caagaggagacccagaagtcttatccactgtgtgttcctgacaaaattccattcttcacc
aaggacatgagttctgccgcaccagaatctttatgtcagttggacatcatggctttcttt
tttgccaccgtgaaatgtgctgcctcagcatacgaagaacgctgcaaagtgacccgcttt
gaccagtaccagcctcgcctcctcccagcatgctttagtgcaaacctgtgtactgagccc
cagagagaatggtgggatgccatgtacaaattctgtcacaatttggcacgagaccagacc
cccaagctacgcctggtcatacagagggggctggagaccgtaagactgggaggcacccac
ggggtgtcagtggctctcatcatacacctcgccaggacgtttgatgaacgggtgaaggag
ttgaaatccctggagttggaggatggagacagactgcacgcactggaacgacgagctgct
cattactgggaggaagcaatggtgcttttatccagaattgaaaggaaaatgaacatccct
ctgcccaaggaccgtttatttatagacgaccgcccaatgagtctcgatgaaaatcggatc
cagtacctaatagagcagtccaagttctccctggcaacggttgccatgcgagagggtcgc
ctggaagaagcaagggaacagttcctgaagctcaaacttccctgggcctcgtattacctg
gctcagatatacagaaaaatggctgatgagatcatgacgacagatgaagaggcaaccaat
caaaaattagctcttgttgaacaatcattagatgccttgtatcagacaatggacaaaatt
cagggagagaaaaatcatgagctccatcggatgattcctaatgatatagatgagtgtgtt
tgtgaacttgaaaacctacgtcgagcagcgctgggaatttctgtggtggacagtgtgtca
cggtacgaggacgcaaaggacgatgtggatgggtcagacgaggacacgcccagttacagc
acccccacagccagtcgggaggatcgggagcagtccatgcgagcgttgtcccctttgtca
atgctccccaccagtagcagcaccccagccgtcaaggtcaaatccccggcaagtgtccac
ttcagtcccaacgaggcgagaagccggacacgaggcagtccggagaggctggaggccagg
ctgtgggcactggaggccaaacaacagactacgctggagctgatgagtgaattaaaagat
cagctgaaggagcttcgtcaggagcgtgctcagttccgagagctggagaagaagatgatg
gaacacattttgacgtgcaacactcagccttctcagccctatatgccctcagtcttaccc
ccaccaccaccaccaccccccataccgtaccaacaaattcctcacttaccctcccagttc
ccctcctacccccctacctcctggataccaccctccagttataactacacccagcccgcc
tcccctatccctgggggtgggcctatgtcaaatcgccgtcagtttgggagggctgggcag
ctgagacctgagtttgaggaggagatttctcagtttggggaggatctgtacgtagatgac
gggtcccagcctctgccggccgtgtgtgtggagcccccgtcacagctggttcaggactgg
cccttcggtaacaaggcaggcatggaaggaaagtccaccattacctacgccccaccgcca
ccagctgggggcagactgccccagcccggcctcctggccaacacactgagagggcccgcg
ctccagtacttcacatcatctcaggagcaaaagcccatgcctggtcctgggttcttctcg
tccccaaaacccgaggccccaccctcggcctccgtgatcgcccaggccctggcaaagtct
gcgtccccttcggtgacccccgccctctcctccctcgcaggtcaaccaatcccaagcatt
tctgcagggttgccctctatggaaggaactgggtcctctatgcctttatttggcagcctt
atggcggcctctaaatctccagacaaggtggcctctggagaaccagccactcagggcata
ctccaccccccgggcaagttctccttcactgcccccacagtgtccagctcagcctcagct
ggctccttgtcatttatgggggaaagcactgcgagtcccagcagtgttccagtgacccaa
agcagttctgttcctggaacttttgcgggatttggatccaagcctcaggtgccaggttct
tcggggtctttctctttcactaagccagcgttcgggactccccctacaacggcagcatct
gagacccctggcggtgcatcgccgttcactagtttcacaggatttggatcctctggcttg
gcttcatttggtggactcggatctcaagcagagaactctgacaaaggcacatctgcattt
ggtgtgaaaacaacacctacccccagtcctgtaaaaccagctgacactttttctcaatcc
acaccctcccagtctccacggaaacgaaacaacagcaccacagtggaggagtatgaaccc
aacgtggacttcaaaccggtgattgatctgcccgacttggtggaagtgaaaagtggtgag
gaagacgaggaagtgctcttctgtcaacgcgccaagttgttccgattcgatgccgacacg
aaacagtggaaagaaaggggagtaggggaaatgaagatcctgaagcatcgtactcgcaac
agctccagaatcatgatgagaagagagcaggtgctgaagctttgtgccaatcataagatc
acacaggatctgaagctgtccccaatggccaactcggacaagacgtggtgctgggtagca
aatgactactcggaagaggagctaaaggttcaaaaactggcagttcggttcaagacagcc
gaactagcagcagactttaaagaggtgtttgagaagtgtcagaaagaaggtgaggtagaa
acctctcctgcagagattagcaagtcaccagagaaaatggagccaatcaagtctcaagcc
agcacagaaaaaacagcagatgtcaagcaagtgtccctgcaggaaatgtttaaacccaaa
gcggggacttggacatgccagacatgtatgattcagaatggacctgaagcgtctgtttgt
gtagcatgcagcacaaggaagcccagcgggaaacccagtccagtgaaggaggaagtaaaa
ccaagcatccccaagacggaccaacccagtctggctgagctgttcaaacccaaatcaggc
tcctggtcctgtgaaatctgtctggtcacgaacgacgctgacaagttacggtgtgtggca
tgcagcactctgaaaccaggagtgaaagcagaggatgtgaaacaggaggggaaggcggct
actgggggactccattttggaactcagtctacagccaaatctggatttacgtttggggct
tctgcagctagtagtacaccggctaccggaggttttgtatttggaacctcaacaactgcc
agctctaccgctgcacctggaggctttgtatttggatctccatcgacgtctaaatctgga
gctacaagtacggccggaggaggatttgtgtttgggacctcgaccacaaaaacaactacc
ccagctacaaagggtggtgctggcttcacatttggaacagcacctgtaaaaacaaccaca
gcagacacaactgcaactacaaagaccgggattacctttggaactccgacaacgcagact
gctgcagcaaagtctgtgatctcagcagaaacaactaagactcaggtgacagcagcccca
acaaaaccagctgtcacttcaacttctggcttcccttttggaacatctgcttccaccaca
accggctcctcagagtctggtggctttaactttggaggaggggcaaataaagggttttca
tttggaacttcatcaaaagaggagaaaactagttctgaaaaaagtggatttaattttggt
ggtgtgaaaagttcaggtttctcatttggaacaccctcaaccaaaggagaaaaaccagag
acagtggcactagatagcggaaagactgaaaatgtgggaggtaactccaattcatcgaca
ctgtttggatcaacaggcagtgctggcttctcgtttggacagaaatcttttacatttgga
tccaaatctcctgaacagaaaccggattccaccacatctgtaacagtcacccccaaacct
gttgattcagcatcaggaccaaaagcggaacctgtcatatttggagttgacagcagtgca
aaatcaggattccagtttcaacttgattcttctaccacttcaacatcggaaaataaagat
aaagacaaaagtccattcaaatttacattttcgccatcaaaatccagctcgacggtgcct
aaatcaccggatgtggaccgtgagggtatgtatgtcaacaaggaaggagaggacgaccac
attttctttgagccagtgattcagcttcctgacaaagtggatgtggttactggggaggaa
gacgagaaagttctgtttgagcaccgggccaaactcttccgatttcacaacaaggaatgg
aaggagagaggtctcggagacatcaagattctagaaaacaagcgcaccaaaagaattcgg
gtcctgatgagacgagaacagattctcaagatttgttgcaatcacaacatctcagaggat
ctggacttgaagcccatgccaaactccaatgggaaagcctggacgtggtacgccatggac
cactccgatgatgaaccaaagtgtgaacaattttctgtcaggttcaaaacaccagaaatt
gccaataaattcaaagcggcctttgacttggctaaatcaaaagtatctgggcagtcagag
ccagcagaaacccagacccccagttctccagccgtcacatcctctcgtccccctataatg
ctccagacactgcttagtgaggacgaggatctggtttttgtgaaggaggagaaggctacc
ccagctcaggtggcacaagccagaaagttcatgttaccagatcatttttatctctatgaa
aatgccccaccttgtccaggatgtgttggttgtgaggactatcaggagggaaccaaaatc
tccagaaaaacaagaactccctctcccaagaaaaagcaagaagagataccacccaaaact
tcaaatgctgacccttcatcctctggtggactatttggtgccacagctgctccttctggt
ggactatttggtgcaacggcagcaccctctggaggactgttcagtgctctggccttggga
ggaggtggggactcggctgcagccactggcttgtttggtcagccacaaggggcaacagga
gggatatttggtggtgggggagggtcatccttttcgttctctgggatagcagcagccata
gactctcagccaactgctttcaagaaagatgacaccaagccattcagctggtccggggca
ggtcagaaattatttaaacaagaggaaggggaggaggagggggatgaagttcctcaaggg
gaggatccacattttgagccggtggttcctctgccagacctagtggaagtgaaaacaggt
gaagaggactatgaaaaactgttcagcaatcgagctaaattgttccgttacgacaaggat
actcagcaatggaaagagaagggaattggagaaatgaaaattctacgacacattggcact
ggtcaatacaggttacttctgcgaagagaacaggttctgaagctagcttgtaatcagtgg
ctgacccctgaccttaaatttcaaccaatgcacacatcagaaacagcatggtgttgggtt
ggtcaggatttcagtgacaatgaggcaaaattagagcagcttgctgtcaaatttaagact
attgaattagcaaaggagtttaaggataaaattgatgaatgtcaaaagctgcttgctgaa
aatcctcctgccaccattgcaacaaatccacagacagaccatggatctcaaggaaattcc
acagaagaccccgatgacgaagacgtggaagaggacgatgatgatgagtatgacgatgta
gaggagatcttgttggagaaacgagtgacattctatatgattgagaataatcagtggaag
gacaagggaactggtgtattaagggtgatctacgatgatgatgtcaatgcaaacaaagtg
accttcactacagacaagaaggaggacctctgtaatcacctgattgccatggagtccaac
atcaatattgataagggcaagcgttactgtgagtggcatcccatagactttgctacggac
gagccaatcaggaggggctttagggctgttttcagctcagtacctgctgccgaggatttt
tacaaaagctttcaacagggacagacattagcacgagactctgaaatctcggagcgagac
atgacggcccgcgagttgacattccctgaggtccatggacaaggcgccaatgatgattga
DBGET
integrated database retrieval system
