Conexibacter woesei: Cwoe_4716
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Entry
Cwoe_4716 CDS
T01153
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cwo
Conexibacter woesei
Pathway
cwo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cwo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Cwoe_4716
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cwo03400
]
Cwoe_4716
Enzymes [BR:
cwo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Cwoe_4716
DNA repair and recombination proteins [BR:
cwo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Cwoe_4716
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
DUF1999
Motif
Other DBs
NCBI-ProteinID:
ADB53129
UniProt:
D3FA34
LinkDB
All DBs
Position
complement(5032785..5035232)
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AA seq
815 aa
AA seq
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MAPALDVCPIALPGYGPPMSPRRDSLDAYRAKRDFGATIEPAPGDAAAARSSRADDAPAE
FVVQQHDATRLHWDLRLERDGTLASWALPRGLPLDPHDDRIAVRTEDHPLEYLDFHGEIP
KGSYGAGTMEIFDRGTYDVHEFTDRKVEVTLHGERGRAVGRYGLFPLGRRAERADGPQGD
WMIHRMEPPADPEREPLPEHLLPMLAKAGELPAAREDDAWGYEIKWDGVRALLWSDHGHV
RVQSRTQREIAERYPEVKPIGRALGAHEVVLDGELVALDEHGKPSFERLQSRMNAGSEGA
IRRAARAVAVTYVIFDLLHLDGRSLLHEPYATRREALRALSLDGAAWRTPAYHRGHGAAL
LAATREQGLEGIVAKRLDGVYEPGRRSGAWRKLRNRLRQELVIGGWLEGEGNRAQRIGAL
LVGDREQDGGPLRYAGRVGSGLTEAMLDDLLARLRARERAGSPFAPAPAAARIPRGAHWV
EPELVADVEYSERTSEGLLRQPVFKGLRDDKPPELVVRERADLRGQRFSNWDKVLYPASG
FTKGDLIDYYVAIAPTLLPHLQDRPITLRRWPDGVEGRSFYEKNAPSHRPDWVQTASIFS
RSERRRIDYCLVQDTATLAWTANLAAIELHPSLSLARAMSHPTAVVFDLDPGEPAGLPEC
AEVALVLEGLFGQLGLRSVVKTSGSKGLQVYVPLGERAATYEQTKPFAKRIAELLERRLP
DLVVARMSKRLRAGKVLVDWSQNDEHKTTVAVYAVRARDRPTVSTPLSWEELRAAHAAGV
ADRLAFEPADVLARVADQGDLFASMLGSAQELPQL
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atggcccccgcgctggacgtatgtccgatcgccctgcccgggtacggtccccccatgagc
ccgcgccgcgacagcctcgacgcgtaccgcgccaagcgcgacttcggcgcgacgatcgag
ccagcgccgggcgatgccgccgccgcgcgctcctcgcgcgcggacgacgcgccggccgag
ttcgtcgtccagcagcacgacgccacccgcctgcactgggacctgcggctggagcgcgac
ggcacgctcgcctcgtgggcgctgccgcgcgggctcccgctcgacccgcacgacgatcgc
atcgccgttcgcaccgaggaccacccgctcgagtacctcgacttccacggcgagataccg
aagggcagctacggcgccggcacgatggagatcttcgaccgcggcacctacgacgtgcac
gagttcaccgacagaaaggtcgaggtcacgctgcacggcgagcgcggccgcgcggtcggg
cgctacggcctcttcccgctcgggcgcagagccgagcgcgcggacggcccgcagggcgac
tggatgatccaccggatggagccgccggcggatcccgagcgggagccgctgcccgagcac
ctgctgccgatgctcgcgaaggccggcgagctgcccgccgcgcgcgaggacgacgcgtgg
ggctacgagatcaagtgggacggcgtgcgggcactgctgtggtccgaccacggtcacgtc
agagtccagagccgcacgcagcgcgagatcgccgagcgctatccggaggtcaagccgatc
ggtcgcgcgctcggcgcccacgaggtcgtgctcgacggcgagctggtcgcgctcgacgag
cacggcaagccgagcttcgagcggctgcagagccgcatgaacgcgggcagcgagggcgcg
atccggcgcgccgccagagcggtcgcggtcacctacgtgatcttcgacctgctgcacctc
gacggccgctcgctgctgcacgagccgtacgcgacacgccgcgaggcgctgagagcgctg
agcctcgacggcgccgcctggcgcacgccggcgtaccaccgcggccacggcgcggcgctg
ctcgcggcgacgcgcgagcaggggctggaggggatcgtcgccaagcggctcgatggcgtc
tacgagcccggccgccgcagcggcgcgtggcgcaagctgcgcaaccggctgcggcaggag
ctggtgatcggcggttggctggagggggagggcaaccgcgcgcagcggatcggcgcgctg
ctcgtcggcgaccgcgagcaggacggcggcccgctgcgctacgccggccgcgtcggcagc
ggcttgaccgaggcgatgctcgacgacctgctcgcgcggctgcgcgcacgtgagcgagca
ggctcaccgttcgcaccggcgccggccgcggcgagaatcccgcgcggcgcccactgggtc
gagcccgagctggtcgccgacgtcgagtacagcgagcgcacgagcgagggcctgctgcgt
cagcccgtcttcaagggattgcgcgacgacaagccgccggagctcgtcgtgcgcgagcgc
gccgacctgcgcggccagcggttcagcaactgggacaaggtcctctacccggcgagcggg
ttcacgaagggcgacctgatcgactattacgtcgcgatcgcgccgacgctgctgccgcac
ctgcaggaccgcccgatcacgctgcggcgctggcccgacggcgtcgagggcagatcgttc
tacgagaagaacgcgccgtcacaccggcccgactgggtgcagacggcgtcgatcttcagc
cgcagcgagcgcagacggatcgactactgcctcgtgcaggacacggcgacgctcgcgtgg
acggcgaacctcgcggcgatcgagctgcatccgtcgctgtcgctcgcgcgcgcgatgagc
cacccgacggccgtcgtcttcgacctcgaccccggcgagcccgccggcctcccggagtgc
gccgaggtcgcgctggtgctcgaaggcctgttcggccagctcggtctgcgcagcgtcgtc
aagacgtcgggctcgaaggggctccaggtctacgtgccgctcggcgagcgggccgcgacg
tacgagcagacgaagccgttcgcgaagcggatcgccgagctgctggagcggcggctgccc
gacctcgtcgtcgcgcgcatgtcgaagcggctgcgggccggcaaggtgctggtcgactgg
agccagaacgacgagcacaagacgacggtcgcggtctacgcggtccgcgcgcgggatcgg
cccacggtgtcgacgccgctgagctgggaggagctgcgtgcggcgcacgcagcgggcgtc
gccgaccgcctcgcgttcgagcccgccgacgtgctggcccgcgtcgccgaccagggcgac
ctgttcgcatcgatgctcggatccgcccaggagctgccgcagctctga
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