Corynebacterium xerosis: FOB82_11190
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Entry
FOB82_11190 CDS
T06491
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cxe
Corynebacterium xerosis
Pathway
cxe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cxe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOB82_11190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cxe03019
]
FOB82_11190
Messenger RNA biogenesis [BR:
cxe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FOB82_11190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Motif
Other DBs
NCBI-ProteinID:
QGS35416
UniProt:
A0A6B8TR58
LinkDB
All DBs
Position
2424737..2426905
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AA seq
722 aa
AA seq
DB search
MSENRSRPRKVVRKAGPPQDAEIARAESQAPKNENKKDSKNEAKSGNKNSGSEQSGRQRQ
DQKQDSKQEFRKDQQGQGRSGGPSRGGRGGRGGRGGQGGNANGGGNNRGGRGGQGGQGGR
GGNDRGGRGGRRNVVQSMQGADLTQRLPEPPKAPKDGLRIVALGGISEIGRNMTVFEYKD
RLLIVDCGVLFPSSDEPGVDLILPDFSYMEGKWDRVEALVVTHGHEDHIGAIPWLLKQRG
DIPIIASRFTLALIQAKLQEHRIRPKTVEVNEQDRLQRGPFDLRFFAVNHSIPECLGIAI
KTGAGLVVHTGDIKLDQTPPDRRPTDLPALSRLGDEGVDLFLCDSTNATTPGISESESQI
VPTLRRLVTEAKQRVIFASFASNVYRVQAVIDAAVAANRKVAFNGRSMIRNMRIAEELGL
LNAPRGTIVEMNEAARMAPHKIVLVTTGTQGEPMAALSRMARREHRQITVRDGDRIIMSS
SVVPGNEESVFGVLNMLAQIGAEVITGRDAMVHTSGHGYSGELLFLYNAVRPSNAMPVHG
EWRHLRANKDLAISTGVPAENVVLAQNGVVVDLVDGRARVAGQVPVGQLYVDGTSMGDVD
ADVLADRAEMREGGLITVTSVIDNRTGRPLEKPRAQARGFSDDVKEVLAEVEKLVDETMY
DLAGSGENNPYRMAQEVRRRAEKMINSKYRRSPMIVPTIVPMSSESAGVVSDDDVHDTRE
SL
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgagaatcgcagccgcccccgcaaggtcgtccgcaaggccggaccgccgcaggac
gcggagatcgcgcgtgccgaatcgcaggcgccgaagaacgaaaacaagaaagactcgaag
aacgaagccaagagcggcaacaagaactcgggttccgaacagtccggccgccagcgccag
gaccagaagcaggattccaagcaggagttccgcaaggaccagcagggccagggccgctcc
ggaggcccctcccgtggtggccgcggcggccgtggtggccgtggcggccagggcggcaac
gccaacggcggcggcaacaaccgcggtggccgtggcggacagggtggccagggcggtcgc
ggtggcaatgaccgcggtggtcgcggcggtcgccgcaacgtcgtgcagtcgatgcagggc
gcggatctgacccagcgtctgccggagcccccgaaggcgccgaaggacggcctgcgcatc
gtcgccctcggcggcatttcggagatcggccgcaacatgacggtcttcgagtacaaggac
cgtctgcttatcgtcgactgcggcgtgctgttccccagctcggacgagccgggcgtggac
ctgatcctgcccgacttctcttacatggagggcaagtgggaccgcgtcgaggccctggtg
gtcacgcacggccacgaggaccacatcggcgccatcccgtggctgctcaagcagcgcggc
gacatcccgatcatcgcctcccgcttcacgctggcgctgatccaggcgaagctgcaggag
caccgcatccgcccgaagaccgtcgaggtcaacgagcaggatcgtctccagcgcggcccg
ttcgacctgcgtttcttcgcggtcaaccactccatcccggagtgcctgggcatcgccatc
aagaccggtgccggcttggtcgtccacacgggcgacatcaagctggaccagaccccgccg
gacaggcgcccgaccgacctgccggccctgagccgcctgggcgacgagggcgtcgacctg
ttcctgtgcgactcgacgaacgccaccacccccggcatttcggagtccgagtcgcagatc
gtgccgaccctgcgccgcctggtcaccgaggccaagcagcgcgtgatcttcgcgtccttc
gcgtctaacgtgtaccgcgtgcaggccgtcatcgacgccgccgtggccgccaaccgcaag
gtggcgttcaacggccgctccatgatccgcaatatgcgcatcgccgaggagctgggcctg
ctcaacgccccgcgcggcacgatcgtcgaaatgaacgaggccgcccgcatggcgccgcac
aagatcgtgctggtcaccacgggcacccagggtgagccgatggcggccctgagccgcatg
gcccgccgcgagcaccgccagatcaccgtccgcgacggcgaccgcatcatcatgtcgtcg
tcggtggtgccgggcaacgaagagtcggtgttcggcgtgctcaacatgctcgcccagatc
ggcgccgaggtcatcaccggccgcgacgcgatggtccacacctcgggccacggttactcc
ggcgagctgctgttcctgtacaacgcggtgcgcccgtcgaacgcgatgccggtgcacggc
gagtggcgccacctgcgcgcgaacaaggatctggccatctccaccggcgtccccgccgag
aacgtggtgctggcgcagaacggcgtcgtcgtcgatctggtcgacggccgcgcccgcgtc
gcgggccaggtgccggttggccagctgtacgtggacggcacgtccatgggcgacgtcgac
gccgacgtcctggccgatcgtgcggagatgcgcgaaggcggcctgatcacggtcacgtcc
gtcatcgacaaccgcaccggccgtccgctggagaagccccgtgcccaggcccgcggtttc
tccgacgacgtcaaggaggtcctcgccgaggtcgagaagctggtcgacgagaccatgtac
gacctggccggttcgggcgagaacaacccgtaccgcatggcgcaggaggtccgccgccgc
gcggagaagatgatcaactcgaagtaccgccgcagcccgatgatcgtcccgaccatcgtg
ccaatgtcctccgagtccgccggcgtcgtttccgacgacgacgtgcacgacacccgcgag
agcctgtag
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