Cyanobium sp. NIES-981: CBM981_1674
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Entry
CBM981_1674 CDS
T04888
Symbol
ydbK
Name
(GenBank) putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; 4Fe-4S cluster binding protein
KO
K03737
pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:
1.2.7.1
1.2.7.-]
Organism
cyi
Cyanobium sp. NIES-981
Pathway
cyi00010
Glycolysis / Gluconeogenesis
cyi00020
Citrate cycle (TCA cycle)
cyi00620
Pyruvate metabolism
cyi00650
Butanoate metabolism
cyi01100
Metabolic pathways
cyi01110
Biosynthesis of secondary metabolites
cyi01120
Microbial metabolism in diverse environments
cyi01200
Carbon metabolism
cyi01210
2-Oxocarboxylic acid metabolism
Module
cyi_M00307
Pyruvate oxidation, pyruvate => acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
cyi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00010 Glycolysis / Gluconeogenesis
CBM981_1674 (ydbK)
00020 Citrate cycle (TCA cycle)
CBM981_1674 (ydbK)
00620 Pyruvate metabolism
CBM981_1674 (ydbK)
00650 Butanoate metabolism
CBM981_1674 (ydbK)
Enzymes [BR:
cyi01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.7 With an iron-sulfur protein as acceptor
1.2.7.1 pyruvate synthase
CBM981_1674 (ydbK)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
POR_N
POR
EKR
PFOR_II
Fer4_7
Fer4_6
Fer4_21
Fer4_16
Fer4
Fer4_9
TPP_enzyme_C
Fer4_10
Fer4_17
Fer4_2
Transketolase_C
Fer4_8
Fer4_18
Fer4_4
Fer4_15
Motif
Other DBs
NCBI-ProteinID:
SBO43385
UniProt:
A0A182APL3
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All DBs
Position
I:complement(1500677..1504399)
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AA seq
1240 aa
AA seq
DB search
MTTLTQLPGVQAAVQPERVTLDANEAVARVAYRLNEVIAIYPITPASPMGEWADAWASQG
RPNLWGAVPEVVELQSEGGAAGTVHGALQAGALTTTFTASQGLLLMLPNLYKVAGELTPA
VIHVAARSLAAQGLSIFGDHGDVMAARGTGWGLLCSASVQEAADMAAIAARASLRSRLPF
LHVFDGFRTSHEIQKVAALDDDLLRALIPEDAVREHRARALSPEHPVVRGTAQNPDVYFQ
ARESVNRFHDAGPAAVLEAMDRFAALTGRRYQPYQYTGPADAERVLVLMGSGAETALEAA
EVLQAAGERVGVLKLRLFRPFAARWLVEALPATTRAIAVLDRCKEPGSVGEPLYLDVLAA
VAEAWPAVHGPLPLPRVLGGRYGLSSKEFTPAMVKAVADHLKGALVPGADALNHFTVGIH
DDVTHRSLPLEESFVTERPRSESGEVRAVFYGLGSDGTVGANKAAIKIIGEGTDLFAQGY
FVYDSKKSGSVTVSHLRFGPRPIRSTYLIQRPTFVACHQWDFVGRFDLLAGIEPGGVVLL
NSPFEPAETWARLPEALRGQIRRGGLAVHVINAYRVAREAGMGPHINTVMQACFFALSGV
LPRQEALERIRASIHHSYGRKGEAVVAMNLAALDASLDHLQPLHWRSLDAEATAPLPGAV
AQPGPARSPASSEPSLTEPSVRERLAAAPPFVRHVIAPMLERRGDGLPVSALPCDGTWPV
GTARWEKRNIAAEVPVWESDLCVQCGKCVMVCPHGVIRAKVAEPEAFAAAPEGFRTAPAR
DHAFPGQTFTIQVAAEDCTGCSLCVEVCPARDRRQPRRKAINMAPQRPLRQQARGHWDYF
LQLPEVPRAGLNLHRIGQQQLQEPLFAFSGACAGCGETPYLKLATQLFGDRMLVANATGC
SSIYGGNLPTTPWSANGEGRGPAWSNSLFEDNAEFGYGMRVALDQRRQAALSLLECLAPQ
LPPALVEALRTADQGDEAGLLEQRQRVALLKERLQALGQEAGAEPSRAAARLLELADALV
KTSVWLVGGDGWAYDIGFGGLDHVLASGRDVNVLVLDTEVYSNTGGQASKATPLGAVAKF
AAGGKGAAKKDLGLMAMTYGHVYVASVAMGARDEHTIRAFLEAESYPGPSLILAYSHCIA
HGIAMARGMEHQKLAVDAGRWLLYRHDPRRLERGENPLQLDSPAPSRSLKEAMAAEQRFQ
MLRYSQPERAHQLLEEAERERDRRWAAYRALAGSGGGLRS
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
atgacgacactcacccagctgcccggggttcaggcggcggttcagcccgagcgggtcacg
ctcgacgccaacgaggcggtggcgcgggtggcctaccgcctcaacgaggtgatcgccatc
tacccgatcacccccgcctcgcccatgggcgaatgggccgatgcctgggcgtcgcagggg
cggcccaacctctggggagcggtgccggaggtggtggagctgcagagcgaggggggcgcc
gccggcacggtgcatggcgccctgcaggccggggcgctcaccaccaccttcaccgccagc
cagggcctgctgctgatgctccccaacctctacaaggtggcgggggagctgacgccggcg
gtgatccatgtggccgcccgctccctggccgcccaggggctctcgatcttcggtgaccac
ggcgatgtgatggccgcccgcggcaccggctggggcctcctctgctcggcctcggtgcag
gaggccgccgacatggccgccatcgcggcgcgggccagcctgcgcagccggctgccgttc
ctgcatgtgttcgacggcttccgcacctcccacgagatccagaaggtggcggccctggat
gacgacctcctgcgcgccctgatccccgaagacgcggtgcgcgagcaccgcgcccgtgcc
ctcagccccgagcatccggtggtgcggggcacggcccagaacccggatgtgtacttccag
gcgcgggagtcggtgaaccgcttccatgacgccggcccggccgccgtgctggaggcgatg
gaccggttcgccgccctcaccggccgccgctaccagccctaccagtacacggggccggcc
gatgccgagcgggtgctggtgctgatgggctccggtgccgaaaccgccctggaggcggcc
gaggtgctgcaggccgccggcgagcgggtgggggtgctgaagctgcggctgttccggccc
ttcgcggcccgctggctggtggaggccctgccggccaccacccgggcgatcgccgtgctg
gaccgctgcaaggagcccggctcggtgggcgagcccctctatctcgatgtgctggccgcc
gtggccgaggcctggcccgccgtgcatggcccgctgcccctgccccgggtgctgggcggg
cgctacgggctctcctccaaggagttcaccccggcgatggtgaaggcggtggccgatcac
ctcaagggggcgctcgtgccgggggcggatgcgctcaaccacttcacggtgggcatccac
gacgacgtgacccaccgctccctgccgctggaggagagcttcgtcaccgaacgcccccgc
tccgaaagcggcgaggtgcgggccgtgttctacggcctcggctccgatggcaccgtgggc
gccaacaaggcggcgatcaagatcatcggcgagggcaccgatctcttcgcccagggctac
ttcgtctacgactcgaagaaatcgggttcggtcaccgtgtcgcacctgcgcttcgggccg
cggccgatccgctccacctatctgatccagcggcccaccttcgtggcctgccaccagtgg
gatttcgtgggccgcttcgatctgctggccggcatcgagccgggcggggtggtgctgctc
aacagtcccttcgagccggccgaaacctgggcgcggctgccggaggcgctgcgggggcag
atccgccggggcggcctggcggtgcacgtgatcaacgcctaccgggtggcccgcgaggcg
ggcatggggccccacatcaacaccgtgatgcaggcctgcttcttcgccctcagcggcgtg
ctgccccgccaggaggccctcgagcggatccgcgcctccatccaccacagctacggccgc
aagggggaggcggtggtggccatgaacctggccgccctcgatgccagcctcgaccacctg
cagccgctgcactggcgcagcctcgatgccgaggcgacggcacccctgcccggcgcggtg
gcccagccggggcctgcccggagccctgcctccagcgagcccagcctcaccgagcccagc
gtccgcgagcggctggcggcggcgccgcccttcgtgcggcacgtgatcgccccgatgctg
gagcgccgcggcgatgggctgcccgtgagcgccctgccctgcgacggcacctggccggtg
ggcaccgcccgctgggagaagcgcaacatcgccgccgaggtgccggtgtgggagagcgac
ctgtgtgtgcagtgcggcaagtgcgtgatggtgtgcccccacggcgtgatccgcgccaag
gtggccgagcccgaggccttcgccgcggcccccgagggcttccgcaccgcccccgcccgc
gaccacgctttccccgggcagaccttcaccatccaggtggccgctgaagactgcaccggc
tgcagcctctgcgtggaggtgtgtccggcgcgggatcgccgccagccccggcgcaaggcg
atcaacatggcgccgcagcggcccctgcgccagcaggcccgcggccactgggactacttc
ctgcagctgccggaggtgcccagggccgggctgaacctgcacaggatcggccagcagcag
ctgcaggagcccctgttcgccttctccggcgcctgcgccggctgcggcgaaacgccctat
ctcaagctcgccacccagctgttcggcgaccgcatgctggtggccaacgccaccggctgc
agctccatctacggcggcaacctgcccaccaccccctggagcgccaacggcgaaggccgc
ggcccggcctggagcaattccctgttcgaggacaacgccgagttcggctacggcatgcgg
gtggccctcgaccagcggcgccaggcggccctctccctgctggagtgcctggcgccccag
ctgccgccggccctggtggaggccctgcgcacggcggaccagggcgatgaggccggcctc
ctggagcagcggcagcgggtggccctgctcaaggagcggctgcaggccttggggcaggag
gccggcgccgaaccctcccgcgccgccgcccgcctcctggagctggccgatgctctggtg
aaaaccagcgtgtggctggtgggcggcgacggctgggcctacgacatcggcttcggcggc
ctcgatcacgtgctggccagcggccgtgacgtgaacgtgctggtgctcgacaccgaggtg
tactccaacaccggcggccaggcctcgaaggccacgcccctgggggcggtggccaagttc
gccgccggcggcaagggggccgccaagaaggatctgggcctgatggcgatgacctacggc
cacgtgtatgtggccagcgtggccatgggcgcccgggacgagcacaccatccgcgccttc
ctcgaggcggagagctacccgggcccctcgctgatcctggcctactcccactgcatcgcc
cacggcatcgccatggccagggggatggaacaccagaagctggcggtggatgcgggccgc
tggctgctctaccgccacgacccccggcggctggagcggggcgagaaccccctgcagctc
gacagtccggcgccgagccgttccctgaaggaggcgatggcggcggaacagcgcttccag
atgctgcgctacagccagcccgaacgggcccaccagctgctggaggaggcggagagggag
cgcgaccgccgctgggccgcctatcgcgccctggccggcagcggcggaggcctgcggtca
tga
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