Desulfocurvibacter africanus subsp. africanus: Desaf_0308
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Entry
Desaf_0308 CDS
T01662
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
daf
Desulfocurvibacter africanus subsp. africanus
Pathway
daf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
daf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Desaf_0308
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
daf03400
]
Desaf_0308
Enzymes [BR:
daf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Desaf_0308
DNA repair and recombination proteins [BR:
daf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Desaf_0308
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
EGJ48665
UniProt:
F3YU59
LinkDB
All DBs
Position
complement(331661..334456)
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AA seq
931 aa
AA seq
DB search
MARLSEYWRKRDFSRTPEPSGRGPELESGRGFVIHKHKARRLHYDLRLELDGVLLSWAVP
RGPSLDPGQKRLAVRVEDHPVEYGSFEGVIPQGEYGGGTVMLWDRGVWEPEGDPHEGLRQ
GKLHFRLRGEKLSGGWILAHMSGKRAKENDWLLIKVRDEQANQRLDIETDRPESAVTGRT
LAQIASSADRVWSGAGEHASGTDSRRDVRDRERTGAEAEGVTIGTLDGDVRARIAGNVGP
APPAAVEYADTQPLPPPAQGQARPETLTIKNKTAESPRSPGLPDFAAMPGARPGPMPEQI
RPQLATLVDSPPAGEQWLHEIKFDGYRLLLIIDNSKARLMTRGGQDWTHRFPELARAAGG
LTLRRAVLDGEAVVLDERGRPDFQALQNVLKGLSGGTLAMYLFDMPYAEGQDLSGCALIE
RKEALRSVLGAIGQTPSPLRFSDHIVGKGKLVLENACQMGLEGIVSKRADAHYEPRRAPT
WLKSKCGHRQEVVVAGWTDPKGQRTGFGALLVGVHDRQGRLIYAGKVGTGYDTQVLGDLS
GRLAGLATDDAAFADTHRVGSLADVHWVRPELVAEVDFAGWTRDGIMRHPSFKGLREDKP
PNEVVRENPMEPKARESMRKQHVPAKTGRAKGAIKLTHPRKVLVPYTGLTKIGLADYYRE
VAGFMLPHVVGRPLSLVRCPGGLGEGCFFQRHPAGGVPHGVQGVRVLEKGHERTWLSVSD
LDGLLALVQLGVLEIHCWGARNEDLERPDRLVFDLDPGEDVEPARVTAAVLELREFLEGL
GLTGFAKATGGKGFHIVLPLQRKPGWQELREFARAVAEELAVRKPGGFVSVAGKARRSGR
IYIDWLRNARGASSIAPYSTRARPGAPVAVPLTWEELTAGFAPNSFDVQAVRSRVASLRA
DPWEGFFSLRQGLSASMWRALGRKRPAGSLI
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atggccaggctcagcgaatactggcgcaagcgggatttttcgcgcacgcccgagccttcg
gggcgaggaccggagctcgagtcgggccgcgggttcgtgatccacaagcacaaggcgcgc
aggctgcactacgacctgcgcctggaactggatggcgtgctcctgtcctgggccgtgccg
cgcggaccgagcctcgatcctggccaaaaacggctggcggtgcgtgtggaagaccatccc
gtggagtatgggagcttcgagggcgtcattccgcagggcgagtacggcggcggcacggtc
atgctctgggaccgtggcgtttgggagcccgagggcgacccgcacgaaggtctgcgccag
ggcaagctgcacttccggctgcggggcgaaaagctttcgggcggctggattttggcgcac
atgagcggcaagcgggccaaggagaatgattggctgctcatcaaggtccgcgacgagcag
gctaaccaacggctcgatatagaaaccgaccggcccgagagtgcggtcacgggcaggacc
cttgcgcagatagcctcgtcggccgatcgcgtgtggagcggcgcgggcgaacatgcgtct
ggtaccgattctcgtcgagatgttcgtgaccgggaacggaccggagctgaagccgaaggc
gtgaccatcggcactctcgacggcgacgtgcgggccaggatcgccggaaatgtcggacct
gcgccgccggcggccgtcgaatacgccgacacacagccattgcctccaccagcgcagggc
caagcacggcccgaaaccctcacgataaaaaacaagacagcggagtccccgcgctccccc
ggcctgcccgatttcgcggccatgcccggcgcgcgacccggccccatgcccgagcagatc
cggccgcaactggccacgctcgtggactctcctcccgccggggagcagtggctgcacgaa
atcaagttcgacggataccggctgctgctgatcatcgataacagcaaggcgcggctcatg
actcgtggcggccaggactggacccatcgctttcccgaactggctagggccgccgggggc
ctgaccctgcggcgggccgtgctggacggcgaggccgtggtgctcgacgagcgcggccgt
ccggatttccaggccttgcagaacgtgctcaaggggctgagcgggggcacgctggccatg
tacctcttcgatatgccctatgccgagggccaggacctgtcaggctgcgcgctcatcgaa
cgcaaggaggccctgcggtccgttctgggcgcgataggtcagacaccttcacccttgcga
ttctcggaccatatcgtcggcaaagggaaacttgtgctggagaatgcctgccagatgggt
ctggagggcatcgtgagcaagcgcgccgacgcgcactacgagccccggcgcgcgcccacc
tggctcaaaagcaaatgcggccatcgccaggaagtggtcgtagcaggctggaccgatccc
aagggccagcgcacgggcttcggtgctctgctcgtgggcgtgcatgacaggcaaggccgc
ctgatctatgccggcaaggtcggcaccggctatgacacacaggtgcttggcgatctttca
ggtcgtctggccggtttggcgactgatgatgcggcctttgccgacacgcatcgtgtaggt
tcgctggcggatgtgcattgggtgcggccggaattggtggccgaggtggacttcgccggc
tggacccgcgacggcatcatgcgccatccgtcattcaagggcctgcgcgaggacaagccg
ccaaacgaagtggtgcgcgagaacccgatggagcccaaggctcgcgagtccatgcgcaaa
cagcatgttccggccaagaccggcagggccaagggggcgatcaagttgacgcatccgcgc
aaggtgctcgtcccgtacacgggcctgaccaagatagggctggcggactactaccgcgag
gtcgccgggttcatgctcccgcacgttgtcggccggcccttgagcctcgtgcgatgtccc
ggcggtctgggcgagggctgtttctttcagcgccacccggcgggcggagtgccgcacggt
gtgcaaggcgtgcgcgtgcttgaaaaaggccacgagcgcacctggctgagcgtgtcggat
ttggacgggctgcttgcgctggtgcagctcggtgtgctggagattcattgctggggtgcg
cgcaacgaggatttggaacggcctgatcggctggttttcgacttggaccccggcgaggac
gtggagccggcgcgcgtgaccgcagctgtcctggaattgcgcgagttcctggaggggctc
gggctcactggttttgccaaggccacgggcggcaagggttttcacattgtgctgccgctg
cagcgcaagcccggttggcaggagctgcgtgaattcgcgcgcgccgtggccgaggaatta
gccgtgcgcaagccgggtgggttcgtctccgtggcaggcaaggcccgccggagcggcagg
atctatatcgactggctgcgcaacgcccgaggcgcgagcagcattgcgccgtactccacg
cgggccaggccgggtgcgccagtggccgtgccgctgacctgggaggaactgaccgccggc
ttcgcgccgaattcgtttgatgttcaggccgtgcgcagccgcgtggcaagtttgcgggct
gatccctgggagggctttttcagcttgcgccaggggcttagcgcgtccatgtggcgcgcg
ctgggccgcaagcggccggcagggagtcttatctaa
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