Desulfosporosinus acidiphilus: Desaci_2451
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Entry
Desaci_2451 CDS
T02148
Name
(GenBank) ATP-dependent DNA ligase LigD polymerase module, ATP-dependent DNA ligase LigD phosphoesterase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dai
Desulfosporosinus acidiphilus
Pathway
dai03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Desaci_2451
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dai03400
]
Desaci_2451
Enzymes [BR:
dai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Desaci_2451
DNA repair and recombination proteins [BR:
dai03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Desaci_2451
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AFM41401
UniProt:
I4D6H7
LinkDB
All DBs
Position
2557730..2560171
Genome browser
AA seq
813 aa
AA seq
DB search
MTANLNEYNQKRNLTRTLEPEGRTEIAQADLRYVVQHHLARRDHYDFRLEWDGTLLSWAV
PKGPSYDTRDKRLAIKMEDHPLEYRNFEGTIPKGEYGGGIVMIWDEGSWEPYGDVADGLR
AGMLKFVLKGRRLKGKWALVRLKGKAEEKQDNWLLLKENDEYTKKDKELSEFTTSIRTGR
TMMEIEDGEEEKFTSNPFNNTDVQLAKLVSTVPKGEDWLYELKYDGYRIMAYVEGNSVRL
VTRNGNDYTERFQEVVHSLIEWAAGRAMILDGEMVITDEAGKTDFQALQNYLKNHQTKNL
TYIVFDLLALDGADLRGHRLIDRKKTLETLMKGAPINLHYSRHMRGNGKESFRAACEADM
EGIVGKKADSVYRGTRNGDWIKLKCDTRQEFVIGGYTLTDRKTSGISSLLLGIYEGEELV
YAGRAGSGLSEADMKELEEEFTCLKKEESSFRPVPKPRSNEKITWLKPLLVAEIKYAEWT
NDNLLRQASFKGLRRDKNPREIKKEKTDEEMPSPSSGKKVERTMKSSTNSIIIEGIKISN
PDKVIFTDSEITKGDVVKYYAKVAECMLPYVRRRILSIVRCPKGISQTCFYKKHPGPGSK
GIVTIPILTGSGEMEDYFYIENISGLIAEAQMGTLEFHIWGSHVDELEKPDMMVFDLDPD
EGMELSRVRQGVRDMKNILAELSLNSYLKTSGGKGYHVVVPLKPAVAWEGFRDFARRVAE
VMEKKWPDRYTSNVRKAKRTNKIFIDWIRNGRGATSIAPYSLRARKGAGVSMPIAWEELD
TVTPNGVDMAEALRRIGGNDPWKDFFHNNQQLK
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaaatctcaacgaatataatcaaaaaagaaatcttacaagaaccttggaaccg
gaagggagaacagaaatagcccaagcggatctaaggtatgtcgtccagcaccatttggcc
cgcagagatcactacgatttccgcctggaatgggacggtacactcttgagctgggcagta
cccaagggcccttcctacgatactcgggacaaaaggcttgcaataaagatggaagatcat
cctttggaatacagaaactttgagggtacgattcccaaaggggaatatggcggcggaatt
gttatgatctgggatgaaggcagttgggaaccttacggggatgtagctgacgggctccgt
gcaggtatgctgaagtttgttctgaaagggcgaaggcttaaggggaaatgggctcttgtg
cggttaaaaggtaaggctgaggagaagcaggataactggctgttacttaaagagaacgat
gaatatactaaaaaggacaaagaactatcagaattcaccaccagtatcagaaccggacgg
accatgatggaaattgaagatggggaagaggaaaagttcacgagtaatcccttcaacaat
accgacgtgcagcttgctaaattagtcagcacggttcctaagggtgaggattggctttat
gagttgaaatacgatggttacaggataatggcgtatgttgaaggtaacagcgttcgcctt
gttaccaggaacggcaatgattataccgaacgatttcaggaagtggtccattcccttata
gaatgggctgcgggaagggcaatgattttagatggtgaaatggtcatcacggacgaagcg
ggtaaaacggattttcaagctttgcagaactatctaaaaaatcatcagactaaaaacttg
acctatatcgtctttgatctcctggccttagatggagcggaccttcggggacaccgtcta
attgacagaaagaaaacccttgaaactttaatgaagggtgcccccattaatctccattac
agccgtcacatgagaggaaacggcaaggaaagtttccgtgcggcctgtgaggcagacatg
gaagggatcgtaggtaaaaaagccgattccgtatacaggggaacaagaaacggcgactgg
atcaaactaaaatgcgatacgagacaggaatttgtcatcggaggatatactcttactgat
agaaaaacgagcgggataagttctctgctccttggcatctatgaaggtgaggaattagtt
tatgcaggacgtgccgggtccggactgagcgaagccgatatgaaagagctggaggaagaa
tttacatgccttaaaaaagaggagtcatctttccggcccgtccccaagcccaggtcaaat
gaaaaaatcacctggcttaagcccttactggtcgcagaaattaaatatgccgaatggaca
aacgataatcttttaaggcaagcaagcttcaaaggcctgcggagggacaaaaatcccaga
gaaattaaaaaggaaaaaacggatgaggaaatgccatccccatcatccggcaaaaaagtg
gagagaaccatgaaatcaagcaccaacagtatcatcatcgaaggaataaagattagcaat
ccggacaaggtgatctttacagactctgaaataaccaaaggggatgtggttaagtattat
gctaaggtggcagagtgcatgctgccctatgttagacgcaggatcctcagcattgtacgc
tgccctaagggcatctcacagacttgcttctataaaaagcatccgggtcctgggagtaaa
gggatcgtcactatccctattttaaccggcagcggagaaatggaagactacttctatatt
gagaatatatctggactgatagcggaagcacaaatgggtaccctggaatttcatatctgg
ggaagccatgtcgacgagctggaaaagccggatatgatggtatttgatctggaccccgat
gaggggatggaacttagcagggtgcgacagggtgtgcgggatatgaagaatattcttgcc
gagctttccctgaactcataccttaagaccagcggcggcaaagggtaccacgtggttgtc
cctttaaaacctgccgttgcctgggaagggtttcgcgattttgccaggcgagtagccgaa
gtaatggagaagaaatggcctgaccgctacacaagtaatgtaagaaaggctaagcgtact
aacaagatattcattgactggattcgcaacggcagaggcgccaccagcattgccccgtat
tccttgagagcaaggaaaggagcgggggtatccatgcccattgcgtgggaagaattggac
acagtaactcctaacggtgtcgatatggcggaagccctccgaaggatcggcggcaatgac
ccgtggaaagatttcttccataataatcaacagcttaaatga
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