KEGG   Desulfobacca acetoxidans: Desac_0681
Entry
Desac_0681        CDS       T01454                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
dao  Desulfobacca acetoxidans
Pathway
dao03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dao00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Desac_0681
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dao03021]
    Desac_0681
   03019 Messenger RNA biogenesis [BR:dao03019]
    Desac_0681
Transcription machinery [BR:dao03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     Desac_0681
Messenger RNA biogenesis [BR:dao03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Desac_0681
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N AAA_22 OB_RNB AAA_25 ATPase_2 NACHT AAA GpA_ATPase AAA_14
Other DBs
NCBI-ProteinID: AEB08562
UniProt: F2NGE9
LinkDB
Position
complement(800238..801503)
AA seq 421 aa
MRNGEFMNLTELKEKKIGELTSLAREFNIEGAAGLRKQELIFAILQAQTEKNGFIYGEGV
LEILPDGFGFLRCPDYNYLPGPDDIYVSPSQIRRFNLRTGDTVSGQIRPPKEGERYFALL
KVEHINFEDPESTRDKILFDNLTPLYPNQRLHLETGPDNFSPRIMDLMTPIGKGQRGLIV
AAPRTGKTMLLQSIANSVVTNHPEVILIVLLIDERPEEVTDMQRSVKAEVVSSTFDEQAQ
RHVQVAEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVVPPSGKILSGGVDSNALHRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMEIHLDRKLVEKRIFPS
IDINRSGTRKEELLLPQDDLNRIWILRKLLSPLNPIDSMEFLLEKMRGTKDNAEFLASMS
R
NT seq 1266 nt   +upstreamnt  +downstreamnt
gtgcggaatggggagtttatgaatttaacagagttaaaagaaaagaagatcggtgagtta
accagtttggccagggagtttaatattgaaggggcggccggactgcggaagcaggaattg
atttttgccatcctgcaggcccagacagaaaagaacggctttatttatggtgagggcgtt
ttggagattctgccagacggttttggcttcttacgctgcccggattacaattatcttccc
ggaccggatgatatttatgtctccccctcccagattcgccgttttaatctgcgcaccggc
gacactgtttcgggtcagatcaggcctcccaaggaaggcgaacggtatttcgccctgctc
aaggtagagcacatcaattttgaagatccggagagcacccgggacaagatcttatttgac
aacctgacgccgctctatcccaatcaaagactgcatttggaaaccggcccggataatttt
tccccccggattatggatctgatgacgcccatcggcaaggggcagcgggggctgattgtg
gctgctcctcggaccggcaagaccatgctgctgcaaagcattgctaacagcgttgtgacc
aatcatccggaagtaattctgatcgtgctgctcatcgacgaacgtccggaagaagttacc
gatatgcaacggtccgtgaaggccgaggtagtgagttcgaccttcgatgaacaggctcag
cgtcatgtgcaggtggccgagatggttctggaaaaggccaaacgactggtggagcataaa
cgcgatgtcgtaatcttgttagattccattacccgcctggcgcgtgcttataacaccgtg
gtgccgcccagtggcaagatactgtccggcggggtggattccaacgccctgcatcgcccc
aaacgattcttcggggcagcgcgcaatatcgaggagggtggcagcttaaccatcattgct
accgcgctgatcgataccggcagccggatggacgaagtgatcttcgaggaattcaaaggc
acaggcaacatggagattcaccttgaccgcaagctggtggagaagcgtatcttcccctcc
atagatattaaccgttccgggacccgcaaagaggaattgcttcttcctcaagatgacctc
aaccgcatctggatcttgcgcaaactgctgtcgcccttgaatcctatcgacagtatggaa
ttcctcctggaaaaaatgcgcggcacaaaggacaatgcagaatttctggcttctatgagc
cgttaa

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