Dickeya aquatica: DAQ1742_00232
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Entry
DAQ1742_00232 CDS
T06021
Symbol
rfaD
Name
(GenBank) ADP-L-glycero-D-manno-heptose-6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
daq
Dickeya aquatica
Pathway
daq00540
Lipopolysaccharide biosynthesis
daq01100
Metabolic pathways
daq01250
Biosynthesis of nucleotide sugars
Module
daq_M00064
ADP-L-glycero-D-manno-heptose biosynthesis
Brite
KEGG Orthology (KO) [BR:
daq00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
DAQ1742_00232 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
daq01005
]
DAQ1742_00232 (rfaD)
Enzymes [BR:
daq01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
DAQ1742_00232 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
daq01005
]
Core region
DAQ1742_00232 (rfaD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
NAD_binding_4
Polysacc_synt_2
ThiF
NAD_binding_10
KR
adh_short
Motif
Other DBs
NCBI-ProteinID:
SLM61357
UniProt:
A0A375A5T0
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All DBs
Position
complement(235436..236368)
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AA seq
310 aa
AA seq
DB search
MIIVTGGAGFIGSNIVKALNDAGHRDILVVDNLKDGTKFANLVDLDIADYMDKEDFIASI
VAGDDLGDIDAIFHEGACSSTTEWDGKYMMDNNYQYSKEVLHYCLERGIPFLYASSAATY
GGRTDNFIEDRQYEQPLNVYGYSKFLFDQYVREILPQAESQICGFRYFNVYGPRESHKGS
MASVAFHLNTQLNQGEKPKLFSGSENFKRDFVYVGDVAAVNLWFWQHGVSGIFNCGTGRA
ESFQAVADAVLTWHKQDSVEYIPFPDKLKGRYQAYTQADLSKLRAAGYDKPFKTVAQGVT
EYLAWLNRSV
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgattatcgtgactggcggtgccggcttcatcggcagcaatatcgtgaaggcgctcaat
gacgccggacaccgggatattctggtggtcgataacctcaaagatggcaccaaattcgcc
aatctggttgatctggacatcgccgattacatggacaaggaagattttattgccagtatc
gttgccggtgacgatctgggcgatattgacgcgattttccatgaaggtgcctgttcatcc
accaccgagtgggatggcaaatacatgatggataacaactatcagtattcaaaagaggtg
ctgcactactgtcttgagcgcggtattccattcctgtacgcctcctctgcggcaacctac
ggtggccgtaccgataatttcattgaagatcgccagtacgaacagccgcttaatgtgtac
ggctactccaaattcctgtttgaccagtatgtgcgtgagattctgccgcaggctgagtca
cagatttgcggcttccgttatttcaatgtctacgggccgcgtgaaagtcacaaaggcagc
atggcgagcgtggctttccacctcaatacccaactgaatcagggcgaaaagccgaaactg
ttcagcggcagcgaaaacttcaagcgtgatttcgtttatgtcggcgatgtggcagcggtg
aatctgtggttctggcagcacggtgtctccggtattttcaactgcggtactggccgcgcc
gagtcgttccaggccgttgccgatgcggtactgacctggcacaagcaagacagcgtcgaa
tacatcccgttcccggacaaactgaaaggccgctatcaggcatatacccaggccgacctc
agcaaattacgggctgccggttatgacaagccgttcaaaaccgtcgcccaaggggtgact
gaataccttgcctggcttaaccgcagcgtttga
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