Dactylosporangium aurantiacum: Daura_02915
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Entry
Daura_02915 CDS
T08497
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
daur
Dactylosporangium aurantiacum
Pathway
daur03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
daur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Daura_02915 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
daur03400
]
Daura_02915 (ligD)
Enzymes [BR:
daur01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Daura_02915 (ligD)
DNA repair and recombination proteins [BR:
daur03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Daura_02915 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
UWZ55237
UniProt:
A0A9Q9IJV5
LinkDB
All DBs
Position
complement(668050..668913)
Genome browser
AA seq
287 aa
AA seq
DB search
MPDRIRVDVEGRHLDLTNLDKVLYPQVGFTKGEVIDYYTRISPVLLPHLAGRPLTRIRFP
NGVEGNSFFEKNAPAGTPGWVRTVRLPVPGSSRGRETIDFIVVEELATLVWLANLASLEL
HTPQWRVSDDGEALDPDQLVVDLDPGPPAGLPACYEVALLIRDRLAEDGLELRPKTSGRK
GMQLVAELPGDETADEISAYVKDVAEELSRRRPDLIVAKMARQLRPGKVFIDWSQNNAFK
TTVAPYSLRAGALPTVSAPLTWEEVEEGVLTIADLTSSVVLSRALDA
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaccggatccgggtcgacgtcgagggccgccacctcgacctgaccaacctcgac
aaggtcctctacccgcaggtcggcttcaccaagggcgaggtcatcgactactacacccgc
atctccccggtgctcctgccgcacctggccgggcggccgctgacccggatccggttcccc
aacggcgtggagggcaacagcttcttcgagaagaacgcgcccgccggcacccccggctgg
gtccgcacggtccggctgccggtgcccgggtccagccgcggccgggagaccatcgacttc
atcgtggtcgaggagctcgccaccctggtctggctggccaacctcgcctcgctggagctg
cacaccccgcagtggcgggtctccgacgacggcgaggcgctcgaccccgaccagctcgtc
gtggacctcgacccgggcccgcccgcgggcctgcccgcctgctacgaggtcgcgctgctg
atccgggaccggctcgccgaggacgggctggagctgcggccgaagacctccggccgcaag
ggcatgcagctggtcgcggagctgcccggcgacgagaccgccgacgagatcagcgcctac
gtcaaggacgtcgccgaggagctgtcccgccggcggcccgacctgatcgtggcgaagatg
gccaggcagctgcgccccggcaaggtgttcatcgactggagccagaacaacgcgttcaag
acgacggtcgcgccctactcgctgcgcgccggcgcgctgccgaccgtgtccgcgccgctg
acctgggaggaggtcgaggaaggggtgctgaccatcgccgacctcacgtcctcggtggtg
ctgtcccgggcgctcgacgcctag
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