Dermacoccus abyssi: FV141_03905
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Entry
FV141_03905 CDS
T06197
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
day
Dermacoccus abyssi
Pathway
day03420
Nucleotide excision repair
day03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
day00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FV141_03905
03430 Mismatch repair
FV141_03905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
day03400
]
FV141_03905
Enzymes [BR:
day01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FV141_03905
DNA repair and recombination proteins [BR:
day03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FV141_03905
MMR (mismatch excision repair)
Other MMR factors
FV141_03905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
DUF730
Motif
Other DBs
NCBI-ProteinID:
QEH92768
LinkDB
All DBs
Position
803129..806656
Genome browser
AA seq
1175 aa
AA seq
DB search
MHDLPGQEFLPSPAGRTHAVSDIPTEPATAASNGRRYVSADEIADALGRYRHTPEQKAVI
EAPLEPLLVVAGAGSGKTDTMASRVVWLVANDIVHPAQILGLTFTRKAAGELAERIGQRL
RLLEASGLWKPQADEDGTEGLGEAPTVSTYNAYAGRIVSEHGLRLGIEPDSRMLSESASW
QFAHEVVASWDGDMSDITVGEASVSAGVLATSGELKEHQRDVDDLRAYYEGLLAGLETIP
YAPRKRSLGDAGKALRIKAKGHLQLLPLVEGYTRLKAERSALDFSDQIAFAARLAERFEQ
IGEGERLRYRAVLLDEFQDTSAAQISFLASVFARGEQRPGVIAVGDPHQSIFGWRGASAT
TLASFRQEFALPGEDVTPVASLSTSWRNDQAVLDVANVVAAPLTLASRVPVEPLRARPDA
GPGTVQAARLETDVEEARYVARWIAERRAVVTADGHERTAAVLCRKRSQFVPVLEALDAE
GIPAEAVGLGGLLQTPEVVDLVSMLWVVDDPGRGDHLMRLLTGPAMRLGPADLDALGTWA
RELHERQREEAAAALARAAESAGSAGEGQSPGRSEGEVSPGLLAPVARREADLAEGTRDD
ISLVEAIGELPDESWRGRDDERFSPEALARLAGFHTSLNRLRLLTGLPLADFVGEAERVL
GLDIEVLARPGHDPSTARAHLDAFADVAGTFSAQAERPTLGGFLDWLDAAREEERGLEMP
AIEVNPRAVQVLTVHAAKGLEWDVVAVPGLVEGSFPGLDGRTQAAGDEWAFSQHKVKGWL
SGLASIPYDLRGDRGGLPAFGWRTAADSDDLNDRYGVYREAGQAHERVEERRLAYVAFTR
ARSEMLLTTAPWTSGSKSPRLASSFLEEVIAADLAEVLQWSPMPPTLVDGEPPTNPLEEN
AHEVIWPVDAMADHRAAMTPGARLVEQARERLAEGEDLEAPGQAGLPLEGTPEDRDLEVE
LLLAERARERRREDRSVVLPSHLSASAVVALASDPATFARRLRRPMPSEPAVAARRGTAF
HAWVEQHYGSAALVDVDELPGFFDEEPATDDALPRLKENFLASEWAARTPLDLEVSVETV
VAGYAIRGRIDAVFARADGGVTVVDWKTGARPDAATLRHRSLQLATYALAYARLKGLDPA
MVDGAFFYAASGETYRPRMQTQREIEELLVTATEG
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgcacgatctgcccggtcaagagttcctgccctctccagccggaaggacgcacgctgtg
agcgacatccccaccgagcccgccacggctgcgtcgaacggtcggcggtacgtcagcgcg
gacgagatcgcggacgccttggggcgctaccggcacacgccggagcagaaggccgtcatc
gaggctccgctcgagccgctgctcgtcgtggcaggtgcgggctcgggcaagaccgacacg
atggcctcacgggtcgtgtggctcgtggcgaacgacatcgtgcatcctgcgcagattctc
gggctcaccttcacgcgcaaggcagcgggtgagctcgccgagcgcatcgggcagcgcctg
cgcctgctcgaggcgagcgggctatggaagccacaggcggacgaggacggcaccgaaggc
ctcggcgaggcgcccaccgtttccacctacaacgcctacgccgggcgcatcgtgagcgaa
cacgggctgcgcctcggcatcgaacccgactcccggatgctctccgagtcggcatcctgg
cagttcgcccatgaggtcgtggcctcgtgggacggcgacatgtccgacatcacggtgggt
gaagcgagcgtcagcgcgggggttctcgccacgagcggcgaactcaaggaacaccagcgc
gacgtcgacgatctgcgcgcctactacgagggcctgctcgccggcctcgaaacgatcccg
tacgcaccccgcaagcgcagcctgggagacgctggaaaggcgctgcggatcaaggccaag
ggacatcttcaactgcttccgctcgtcgagggttatacgcggctgaaggccgaacgctcg
gccctcgacttctccgaccagatcgccttcgcggcgcgattggcggagcgcttcgagcag
atcggggagggggagcgtctgcgttaccgcgcggtgctgctcgacgagttccaagacacg
agtgccgcgcagatcagtttcctcgcctcggtcttcgcgcgcggtgagcagcgtcccggc
gtcatcgccgtcggtgacccgcaccagtcgatcttcggttggcgtggcgcgagtgccacg
acgctcgcctcgttccgtcaggagttcgctctgccgggtgaggacgtgacgccggtggcg
tcgctgtcgacgtcgtggcgcaacgaccaggccgtcctcgatgtggccaacgtcgtggcg
gcgcccctcaccctggcttcccgtgttccggtcgagccgctgcgtgcgcgtcctgacgcc
gggccgggcaccgtgcaggcggcccgcctcgagacggatgtcgaggaggcgcgctacgtc
gcgcggtggatcgcggaacgacgtgccgtcgtcactgccgacgggcacgagcgaacagca
gccgtcctgtgccgcaagcgctctcagttcgtcccggttctcgaagccctcgacgccgag
ggtatcccggccgaagccgtcggcctgggcggcttgttgcagacccccgaggtcgtcgat
ctcgtctcgatgctctgggtcgtcgacgatccgggtcgaggtgatcacctcatgcggctg
ctcaccggtccggccatgcgcctgggcccggccgacctcgacgccctcggcacgtgggcc
cgtgaactgcacgagcgtcagcgcgaggaggccgctgcagcgctcgcgcgtgccgccgaa
tccgccggcagcgcaggggagggccagtccccgggccgttcggagggcgaggtgtcaccg
ggtctgctcgcgccggtggcgcgccgggaggcagatctcgccgaaggcacccgcgacgac
atcagcctcgtggaagccatcggtgaactgccagacgaatcgtggcgtgggcgggacgac
gagcgcttctcgccggaggcgttggctcggctggcgggctttcatacctccttgaaccga
cttcgtctgctcaccggtttgccgctggccgacttcgtgggtgaggccgagcgagtgctc
ggactcgacatcgaggtgctcgcgcggccggggcacgatccgtcgacggcgcgcgctcac
ctcgacgcgttcgccgacgtcgccggtaccttctcggcgcaggcggagcgtcccacgctc
ggagggttcctcgactggctcgatgctgcacgtgaggaggaacgtggcctggaaatgccg
gccatcgaggtgaacccccgggccgttcaggtgctcaccgtgcacgcggccaagggcctc
gagtgggatgtcgtcgccgtgcccggcctcgtcgagggttccttccccgggctcgacggg
cgaacgcaggcggccggcgacgagtgggccttctcgcagcacaaggtcaagggttggctc
tcgggcctcgcgagcatcccgtacgacctgcgcggcgaccgaggcggccttcccgcgttc
ggctggcgaaccgccgctgactcggacgacctcaacgaccgttacggcgtctaccgggag
gcgggccaggctcacgagcgtgtcgaggaacggcgcctggcgtacgttgcgttcacccgc
gctcgctcggagatgctcctcaccactgcgccgtggacgagcgggagcaagtcgccgcgg
ttggcgtcgagcttcctcgaggaggtgatcgccgccgacctggccgaggtgctgcagtgg
tcgccgatgccgcccacgctcgtcgacggagaacctccgacgaaccccctcgaggagaac
gcgcacgaggtcatctggcccgtcgacgcgatggccgatcaccgcgcagccatgacgcct
ggtgcccgcctcgtcgagcaggcgcgcgaacgtctcgccgagggcgaggacctcgaagca
ccgggtcaggccggcctgccgctcgaaggcaccccggaggaccgcgacctcgaggtcgaa
ctccttctcgcagagcgcgctcgtgagcgtcggcgtgaggatcgctcggtcgtgcttccc
tcccacctgtcggcctcggccgtcgtcgcgctcgcgagcgatccggccacgttcgcgcgg
cgcctgcgtcgacccatgccgagcgagccggcggtcgccgcgcgccgcggtacggcgttc
cacgcctgggtcgagcagcactacggctcggctgcgctcgtcgatgtcgacgagctgccc
ggattcttcgacgaggaaccggccaccgatgacgccctgccgcgcctgaaggagaacttc
ctcgcgagcgaatgggccgcgcgcaccccgctcgatctcgaggtctccgtcgaaacggtc
gtggcgggctacgccattcgcggtcgcatcgacgccgtcttcgcgcgcgccgacggtggc
gtcaccgtcgtcgactggaagacaggcgcccgcccggacgccgcgacgttgcgccatcgc
agccttcagctcgccacgtacgccctcgcgtacgcgcgcctcaaggggctcgacccggcc
atggtcgacggggcgttcttctacgccgcgagcggagagacgtaccgcccgcggatgcag
acccaacgtgagatcgaggagttgctcgtcaccgccaccgaggggtga
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