Dermacoccus abyssi: FV141_04140
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Entry
FV141_04140 CDS
T06197
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
day
Dermacoccus abyssi
Pathway
day03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
day00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FV141_04140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
day03021
]
FV141_04140
03019 Messenger RNA biogenesis [BR:
day03019
]
FV141_04140
Transcription machinery [BR:
day03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
FV141_04140
Messenger RNA biogenesis [BR:
day03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FV141_04140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
NACHT
AAA_22
ResIII
Motif
Other DBs
NCBI-ProteinID:
QEH92807
LinkDB
All DBs
Position
857194..859335
Genome browser
AA seq
713 aa
AA seq
DB search
MSEQTPAAPAQSSPRGALSAMRLDELKQLAQSMGIGGISKMRKVDLVAAIRAARAEANGV
SGSRSQAGELTSTAPSARRAVREEQAAEAPTEKPQRAQSDGDSTNTNAAGAPAGDASDNG
DEQGQGRPRTRRGRRGGEERPKRDGQNDGANAQNESGQNDASNNAKNDGRGQRDERRDGG
KRDGNDSGSNRGTSDQSGADKGNSDKGHDKNSNERSEKHDGSDKRERGQGNQNERRDGER
GDKRENRENRENRDNNDRSDKRDDRSDKNERDGGQRGGRNERNNNGNNNDDDERGGRRRR
QRGRDRDRSGRRGGRGRDFEDEAPEIREDDVLVPVAGIVDVLDNYAFVRTTGYLSGPTDV
YVPMNLVKKNALRKGDAVTGAVRALREGEQLPARQKFNALVRLDTVNGMTVDAAKKRVEF
GKLTPLYPQERLRLETTPNVLTTRIIDLVAPIGKGQRGLIVAPAKAGKTMVMQSIANAIT
TNNPECHLMVVLVDERPEEVTDMQRAVKGEVIASTFDRPATDHTTVAELAIERAKRLVEM
GHDVVVLLDSITKLGRAYNLAAPASGRILSGGVDSAALYPPKKFFGAARNIENGGSLTIL
ATALVETGSRMDEVIFEEFKGTGNMELKLDRGLANRRIFPAVDINASGTRREEILLSAEE
LKIMWKLRRVLAALDQQQGIELLIDRLKKTKHNVEFLMQVQQTSNIKLDDDED
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
gtgtctgaacaaacgcctgccgcaccggcgcagtccagcccgcgcggcgcgctgtccgcg
atgcgcctcgacgagctcaagcagctcgcgcagagcatgggtatcggtggcatctccaag
atgcgcaaggtcgacctcgtcgctgccattcgcgccgcgcgcgcagaggccaacggtgtg
agcggcagccgctcgcaggccggcgagctcacctcgaccgcgccgagcgcgcgtcgtgcc
gtgcgtgaggagcaggccgccgaagcgcccaccgagaagccgcagcgcgcccagagtgac
ggtgactccacgaacacgaacgccgccggagcaccggcaggtgacgcgtcggacaacggt
gacgagcaggggcagggacgcccgcgtacccgtcgcggtcgccgcggcggtgaggagcgt
ccgaagcgtgacggccagaacgacggcgcgaacgctcagaacgagtccggccagaacgac
gcgtcgaacaacgccaagaacgacggccgtggccagcgcgacgagcgccgtgacggtggc
aagcgtgacggcaacgactccggttcgaaccgcggaacctccgaccagtcgggtgccgac
aagggcaactccgacaagggccacgacaagaacagcaacgagcgctcggagaagcacgac
ggctccgacaagcgcgagcgtggccagggcaaccagaacgagcgtcgtgacggtgagcgc
ggcgacaagcgggagaaccgcgagaaccgcgagaaccgagacaacaacgaccgttcggac
aagcgcgatgaccgttccgacaagaacgagcgtgacggtggccagcgtggcgggcgcaac
gagcgcaacaacaacggcaacaacaacgatgacgacgagcgcggcggacgccgccgtcgt
cagcgcggccgtgaccgtgaccgttccggccgccgcggtggccgtgggcgtgacttcgag
gacgaggcacccgagatccgcgaggacgacgtcctcgtgccggtcgccggcatcgtcgac
gtcctcgacaactacgcctttgtgcgcaccaccggctacctctcgggcccgacggacgtt
tacgtcccgatgaacctcgtcaagaagaacgcgctgcgcaagggtgacgccgtcaccggt
gccgtgcgggccctgcgcgagggtgagcagctgccggcacgccagaagttcaacgcgctc
gtgcgcctcgacaccgtcaacggcatgacggtcgacgccgccaagaagcgcgtcgagttc
ggcaagctgacgccgctctacccgcaggagcgcctgcgcctcgagacgacgccgaacgtc
ctcacgactcgcatcatcgacctcgtcgcccccatcggtaagggccagcgcggcctcatc
gtcgcgcccgccaaggccggtaagacgatggtcatgcagtcgatcgcgaacgccatcacg
acgaacaaccccgagtgccacctcatggtcgtcctcgtcgacgagcgtcccgaggaagtc
accgacatgcagcgcgcggtcaagggtgaggtcatcgcctccaccttcgaccgtcccgcc
acggaccacacgacggtcgccgagctcgccatcgagcgcgccaagcgcctcgtcgagatg
ggtcacgacgtcgtcgtcctcctcgactcgatcaccaagctcggacgcgcctataacctc
gccgccccggcgagcggtcgcatcctctccggtggtgtcgactcggccgcgctctacccg
ccgaagaagttcttcggtgccgcgcgcaacatcgagaacggcggatcgttgacgatcctc
gccacggcgctcgtcgaaaccggctcgcgcatggacgaggtcatcttcgaagagttcaag
ggcaccggcaacatggagctcaagctcgaccgaggcctcgccaaccgccgcatcttcccg
gccgtcgacatcaacgcctccggtactcgacgcgaggagatcctcctgtcggccgaagag
ctgaagatcatgtggaagctgcgtcgcgtgctcgccgcactcgaccagcagcagggcatc
gagctgctcatcgaccgcctcaagaagacgaagcacaacgtcgagttcctcatgcaggtt
cagcagacctccaacatcaagctggacgacgacgaggactga
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