Desulfotomaculum nigrificans: Desca_1522
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Entry
Desca_1522 CDS
T01498
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dca
Desulfotomaculum nigrificans
Pathway
dca03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Desca_1522
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dca03400
]
Desca_1522
Enzymes [BR:
dca01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Desca_1522
DNA repair and recombination proteins [BR:
dca03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Desca_1522
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AEF94377
UniProt:
F6B6K3
LinkDB
All DBs
Position
complement(1648722..1649630)
Genome browser
AA seq
302 aa
AA seq
DB search
MTAETATEVMIEGKKLKLTNLNKIMWPEGLTKAHLVKYYTDIAPYLLPHLKGRPIVMKRY
PHGIEGEFFYQKDCPDYAPEWISTTTIIHSAKKVNYIICNDVATLVWLANQGCIEIHAWL
SANPAVEYPNIAVIDLDPGDEATFEDVMRVALVVRQALNQLKLKGFPKTSGASGMHVFIP
INPVYSFQEVTKAMGFVAKLVTSTYASKATIERSLDKRSKNKVYVDYLQNTRGKSMAWTY
SLRPLPGAPVSTPLLWEEIESLAIDPRQFNMHNILGRLHLFGDLFAPMANQMQELDHILA
MG
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
atgactgcggaaacggcaaccgaagttatgatagagggaaaaaaactaaaactgaccaat
ttaaataagataatgtggcccgaggggttgaccaaagcacatttagtaaagtattatacg
gacattgcgccatatttgttacctcatcttaaaggacgaccaattgtcatgaagcgatac
ccgcacgggattgaaggggaattcttttatcaaaaagattgtccggattatgccccggaa
tggatcagtaccactaccattattcattccgctaagaaagtcaattatataatatgtaat
gatgtagccacgctggtttggttggctaaccagggctgcattgaaatccatgcctggtta
tcggccaatccggcagtggaataccccaatatagcagtaatagatttggaccctggagat
gaagctacctttgaggatgttatgagagtagctttggtggtaagacaagcattaaaccag
ttaaaattaaaaggtttccctaaaacctccggtgccagtggaatgcatgtttttattccc
attaacccggtttattctttccaggaggtaacaaaagctatgggttttgtggctaaatta
gttaccagtacatatgccagcaaggctaccattgaaaggtcgttggataaaagaagtaaa
aataaggtttatgttgactacttacaaaataccaggggtaaaagtatggcttggacctac
agcttgcgacctttacccggggcaccggtatcaacgcccttgctatgggaagaaattgaa
agtttagccatagatcccaggcaatttaatatgcataatattttaggcaggctacatttg
tttggagatttatttgcacccatggccaaccagatgcaagaactagatcacattttagcc
atggggtag
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